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1c6v

SIV INTEGRASE (CATALYTIC DOMAIN + DNA BIDING DOMAIN COMPRISING RESIDUES 50-293) MUTANT WITH PHE 185 REPLACED BY HIS (F185H)

Method: X-RAY DIFFRACTION D_max: 95.9 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1c6v
deposition_date	1999-12-21
title	SIV INTEGRASE (CATALYTIC DOMAIN + DNA BIDING DOMAIN COMPRISING RESIDUES 50-293) MUTANT WITH PHE 185 REPLACED BY HIS (F185H)
keywords	DNA INTEGRATION, DNA BINDING PROTEIN; DNA BINDING PROTEIN
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	30.05 Å
rg_electron	29.38 Å
i0	84275000.00
molecular_weight	70704.0 kDa
excluded_volume	88035 Å³
envelope_volume	113820 Å³
shell_volume	32895 Å³
envelope_diameter	96.0 Å
shell_rg	36.01 Å
envelope_rg	29.04 Å
shape_rg	29.37 Å
total_rg	30.06 Å
total_atoms	4964
n_residues	630
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	95.9 Å
rg_real	30.10 Å
rg_real_error	0.64 Å
i0_real	8.4270e+07
i0_real_error	1.1470e+06
rg_reciprocal	30.08 Å
i0_reciprocal	84270000.0000
total_estimate	0.8809
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	30.8 Å
skewness	0.358
kurtosis	-0.558
angular_range	— – 0.2650 Å⁻¹
current_alpha	0.0000
highest_alpha	20700000.0000
n_real_points	54
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.890; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.978; Smooth: 0.798

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	PROTEIN (SIV INTEGRASE)
formula_weight	18406.0 kDa
mutation	F185H
src_method	man
entity_count	4

Polymer

type	polypeptide(L)
strand_id	A,B,C,D
atom_count	5030

IHGQVNSDLGTWQMDCTHLEGKIVIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGANFASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAVHCMNHKRRGGIGDMTPAERLINMITTEQEIQFQ

Source

organism	Simian immunodeficiency virus
ncbi_taxonomy_id	11723
host_organism	Escherichia coli K12

Entity 2 polymer

description	PROTEIN (SIU89134)
formula_weight	9185.4 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	X

QQSKNSKFKNFRVYYREGRDQLWKGPGELLWKGEGAVLLKVGTDIKVVPRRKAKIIKDYGGGKEVDSSSHMEDTGEAREVA

Source

organism	Simian immunodeficiency virus
ncbi_taxonomy_id	11723
host_organism	Escherichia coli K12

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	66

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6. Citations (1)

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length_a	79.570 Å
length_b	100.000 Å
length_c	150.500 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	16

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

resolution	3.000 Å
resolution_low	6.000 Å
r_factor	0.2030
r_work	0.2030
r_free	0.3620

fit	/app/data/saxs_computation/c6/1c6v/1c6v.fit
pddf	/app/data/pr_computation/c6/1c6v/1c6v.pr.out
profile	/app/data/saxs_computation/c6/1c6v/1c6v.dat

SIV INTEGRASE (CATALYTIC DOMAIN + DNA BIDING DOMAIN COMPRISING RESIDUES 50-293) MUTANT WITH PHE 185 REPLACED BY HIS (F185H)

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)