CANINE PARVOVIRUS STRAIN D EMPTY CAPSID STRUCTURE AT PH 5.5

Method: X-RAY DIFFRACTION D_max: 102.5 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1c8h
deposition_date	2000-05-05
title	CANINE PARVOVIRUS STRAIN D EMPTY CAPSID STRUCTURE AT PH 5.5
keywords	beta barrel, viral capsid, icosahedral symmetry, Icosahedral virus, Virus; VIRUS
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	29.09 Å
rg_electron	28.39 Å
i0	62784800.00
molecular_weight	61177.0 kDa
excluded_volume	76177 Å³
envelope_volume	106440 Å³
shell_volume	32210 Å³
envelope_diameter	107.0 Å
shell_rg	34.33 Å
envelope_rg	28.85 Å
shape_rg	28.36 Å
total_rg	29.13 Å
total_atoms	4321
n_residues	544
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	102.5 Å
rg_real	29.18 Å
rg_real_error	1.04 Å
i0_real	6.2780e+07
i0_real_error	1.0080e+06
rg_reciprocal	29.14 Å
i0_reciprocal	62780000.0000
total_estimate	0.6311
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	33.5 Å
skewness	0.511
kurtosis	0.096
angular_range	— – 0.2750 Å⁻¹
current_alpha	0.0000
highest_alpha	7167000.0000
n_real_points	56
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.733; Stabil: 1.000; Sysdev: 0.062; Positv: 1.000; Valcen: 0.927; Smooth: 0.888

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (5)

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length_a	254.493 Å
length_b	253.601 Å
length_c	452.044 Å
angle_alpha	77.48 °
angle_beta	74.91 °
angle_gamma	69.27 °
z_pdb	120

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.500 Å
resolution_low	9.000 Å
r_factor	0.2600
r_work	—
r_free	—

description	CANINE PARVOVIRUS CAPSID
formula_weight	64705.6 kDa
mutation	K386Q
src_method	nat
entity_count	1

type	polypeptide(L)
strand_id	A
atom_count	4321

CANINE PARVOVIRUS STRAIN D EMPTY CAPSID STRUCTURE AT PH 5.5

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Entity 2 non-polymer

6. Citations (5)

7. Files & Curves (10)

Files (7)

Curves (3)

description	CALCIUM ION
formula_weight	40.1 kDa
src_method	syn
entity_count	2

fit	/app/data/saxs_computation/c8/1c8h/1c8h.fit
pddf	/app/data/pr_computation/c8/1c8h/1c8h.pr.out
profile	/app/data/saxs_computation/c8/1c8h/1c8h.dat