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1cd1

CD1(MOUSE) ANTIGEN PRESENTING MOLECULE

Method: X-RAY DIFFRACTION D_max: 115.3 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1cd1
deposition_date	1997-04-02
title	CD1(MOUSE) ANTIGEN PRESENTING MOLECULE
keywords	CD1, IMMUNOLOGY, MHC, TCR, GLYCOPROTEIN, IMMUNOGLOBULIN FOLD, T-CELL; CD1
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	35.22 Å
rg_electron	34.83 Å
i0	115474000.00
molecular_weight	85531.0 kDa
excluded_volume	106610 Å³
envelope_volume	143190 Å³
shell_volume	34348 Å³
envelope_diameter	118.6 Å
shell_rg	40.80 Å
envelope_rg	34.39 Å
shape_rg	34.80 Å
total_rg	35.37 Å
total_atoms	6026
n_residues	744
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	115.3 Å
rg_real	35.24 Å
rg_real_error	1.06 Å
i0_real	1.1550e+08
i0_real_error	1.9600e+06
rg_reciprocal	35.23 Å
i0_reciprocal	115500000.0000
total_estimate	0.7057
solution_quality	REASONABLE a REASONABLE solution
n_peaks	0
r_peak_primary	— Å
skewness	0.254
kurtosis	-0.586
angular_range	— – 0.2250 Å⁻¹
current_alpha	0.0000
highest_alpha	14210000.0000
n_real_points	46
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.933; Stabil: 1.000; Sysdev: 0.186; Positv: 1.000; Valcen: 0.960; Smooth: 0.851

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

Entity 1 polymer

description	CD1
formula_weight	36023.9 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,C
atom_count	6026

QQKNYTFRCLQMSSFANRSWSRTDSVVWLGDLQTHRWSNDSATISFTKPWSQGKLSNQQWEKLQHMFQVYRVSFTRDIQELVKMMSPKEDYPIEIQLSAGCEMYPGNASESFLHVAFQGKYVVRFWGTSWQTVPGAPSWLDLPIKVLNADQGTSATVQMLLNDTCPLFVRGLLEAGKSDLEKQEKPVAWLSSVPSSAHGHRQLVCHVSGFYPKPVWVMWMRGDQEQQGTHRGDFLPNADETWYLQATLDVEAGEEAGLACRVKHSSLGGQDIILYWDARQAPVGLIVFIVLIMLVVVGAVVYYIWRRRSAYQDIR

Source

organism	Mus musculus
common_name	house mouse
ncbi_taxonomy_id	10090
host_organism	Drosophila melanogaster

Entity 2 polymer

description	CD1
formula_weight	11704.4 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	B,D

IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDSMAEPKTVYWDRDM

Source

organism	Mus musculus
common_name	house mouse
ncbi_taxonomy_id	10090
host_organism	Drosophila melanogaster

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6. Citations (1)

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length_a	59.340 Å
length_b	76.200 Å
length_c	103.400 Å
angle_alpha	90.00 °
angle_beta	102.29 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	2.670 Å
resolution_low	10.000 Å
r_factor	0.1920
r_work	0.1920
r_free	0.3300

fit	/app/data/saxs_computation/cd/1cd1/1cd1.fit
pddf	/app/data/pr_computation/cd/1cd1/1cd1.pr.out
profile	/app/data/saxs_computation/cd/1cd1/1cd1.dat

CD1(MOUSE) ANTIGEN PRESENTING MOLECULE

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)