CHLOROPLAST NADP-DEPENDENT MALATE DEHYDROGENASE FROM FLAVERIA BIDENTIS

Method: X-RAY DIFFRACTION D_max: 70.0 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1civ
deposition_date	1999-04-01
title	CHLOROPLAST NADP-DEPENDENT MALATE DEHYDROGENASE FROM FLAVERIA BIDENTIS
keywords	CHLOROPLAST, LIGHT ACTIVATED, NADP-DEPENDENT, DEHYDROGENASE, OXIDOREDUCTASE; OXIDOREDUCTASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	21.20 Å
rg_electron	20.33 Å
i0	28200700.00
molecular_weight	40626.0 kDa
excluded_volume	50770 Å³
envelope_volume	58150 Å³
shell_volume	23490 Å³
envelope_diameter	70.8 Å
shell_rg	27.35 Å
envelope_rg	20.70 Å
shape_rg	20.34 Å
total_rg	21.18 Å
total_atoms	2853
n_residues	374
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	70.0 Å
rg_real	21.11 Å
rg_real_error	0.46 Å
i0_real	2.8200e+07
i0_real_error	3.9350e+05
rg_reciprocal	21.13 Å
i0_reciprocal	28200000.0000
total_estimate	0.8790
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	25.8 Å
skewness	0.256
kurtosis	-0.324
angular_range	— – 0.3750 Å⁻¹
current_alpha	0.0000
highest_alpha	8375000.0000
n_real_points	69
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.819; Stabil: 0.998; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.971

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

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6. Citations (2)

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length_a	147.800 Å
length_b	147.800 Å
length_c	64.900 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	6

space_group	P 32 2 1
int_tables_number	154
crystal_system	—

resolution	2.800 Å
resolution_low	15.000 Å
r_factor	—
r_work	0.2050
r_free	0.2840

description	NADP-MALATE DEHYDROGENASE
formula_weight	42097.0 kDa
ec_number	1.1.1.82
src_method	nat
entity_count	1

type	polypeptide(L)
strand_id	A
atom_count	2959

CHLOROPLAST NADP-DEPENDENT MALATE DEHYDROGENASE FROM FLAVERIA BIDENTIS

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Entity 2 non-polymer

Entity 3 water

6. Citations (2)

7. Files & Curves (10)

Files (7)

Curves (3)

description	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
formula_weight	743.4 kDa
src_method	syn
entity_count	1

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	106

fit	/app/data/saxs_computation/ci/1civ/1civ.fit
pddf	/app/data/pr_computation/ci/1civ/1civ.pr.out
profile	/app/data/saxs_computation/ci/1civ/1civ.dat