THE BACTERIOPHAGE PRD1 COAT PROTEIN, P3, IS STRUCTURALLY SIMILAR TO HUMAN ADENOVIRUS HEXON

Method: X-RAY DIFFRACTION D_max: 90.2 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1cjd
deposition_date	1999-04-12
title	THE BACTERIOPHAGE PRD1 COAT PROTEIN, P3, IS STRUCTURALLY SIMILAR TO HUMAN ADENOVIRUS HEXON
keywords	BACTERIOPHAGE PRD1, COAT PROTEIN, JELLY ROLL, Viral protein; VIRAL PROTEIN
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	31.39 Å
rg_electron	29.99 Å
i0	229417000.00
molecular_weight	120260.0 kDa
excluded_volume	150240 Å³
envelope_volume	184480 Å³
shell_volume	48579 Å³
envelope_diameter	94.7 Å
shell_rg	39.33 Å
envelope_rg	29.64 Å
shape_rg	29.99 Å
total_rg	30.81 Å
total_atoms	8502
n_residues	1108
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	90.2 Å
rg_real	31.10 Å
rg_real_error	0.42 Å
i0_real	2.2940e+08
i0_real_error	3.1400e+06
rg_reciprocal	31.23 Å
i0_reciprocal	229400000.0000
total_estimate	0.9094
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	1
r_peak_primary	41.5 Å
skewness	-0.018
kurtosis	-0.619
angular_range	— – 0.2500 Å⁻¹
current_alpha	0.0000
highest_alpha	29040000.0000
n_real_points	51
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.967; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.980; Smooth: 0.938

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (3)

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length_a	117.956 Å
length_b	121.296 Å
length_c	126.387 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	12

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

resolution	1.850 Å
resolution_low	35.000 Å
r_factor	—
r_work	0.1780
r_free	0.2050

description	PROTEIN (MAJOR CAPSID PROTEIN (P3))
formula_weight	43346.2 kDa
src_method	man
entity_count	3

type	polypeptide(L)
strand_id	A,B,C
atom_count	8975

THE BACTERIOPHAGE PRD1 COAT PROTEIN, P3, IS STRUCTURALLY SIMILAR TO HUMAN ADENOVIRUS HEXON

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (3)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Enterobacteria phage PRD1
ncbi_taxonomy_id	10658
host_organism	Salmonella typhimurium

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	473

fit	/app/data/saxs_computation/cj/1cjd/1cjd.fit
pddf	/app/data/pr_computation/cj/1cjd/1cjd.pr.out
profile	/app/data/saxs_computation/cj/1cjd/1cjd.dat