CRYSTAL STRUCTURE OF A CALCIUM-INDEPENDENT PHOSPHOLIPASELIKE MYOTOXIC PROTEIN FROM BOTHROPS ASPER VENOM

Method: X-RAY DIFFRACTION D_max: 74.6 Å Quality: GOOD

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	1clp
deposition_date	1994-09-12
title	CRYSTAL STRUCTURE OF A CALCIUM-INDEPENDENT PHOSPHOLIPASELIKE MYOTOXIC PROTEIN FROM BOTHROPS ASPER VENOM
keywords	HYDROLASE; HYDROLASE
method	X-RAY DIFFRACTION

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	21.96 Å
rg_electron	21.47 Å
i0	14142300.00
molecular_weight	27268.0 kDa
excluded_volume	33748 Å³
envelope_volume	40133 Å³
shell_volume	16627 Å³
envelope_diameter	77.8 Å
shell_rg	26.65 Å
envelope_rg	21.62 Å
shape_rg	21.42 Å
total_rg	22.33 Å
total_atoms	1890
n_residues	242
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	74.6 Å
rg_real	22.09 Å
rg_real_error	0.65 Å
i0_real	1.4140e+07
i0_real_error	1.8980e+05
rg_reciprocal	22.07 Å
i0_reciprocal	14140000.0000
total_estimate	0.7875
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	22.3 Å
skewness	0.401
kurtosis	-0.471
angular_range	— – 0.3600 Å⁻¹
current_alpha	0.0000
highest_alpha	1795000.0000
n_real_points	68
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.835; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.731; Smooth: 0.000

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (2)

▶

6. Citations (2)

▶

length_a	50.180 Å
length_b	67.760 Å
length_c	88.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

resolution	2.800 Å
resolution_low	7.000 Å
r_factor	0.1650
r_work	0.1650
r_free	—

description	MYOTOXIN II
formula_weight	13764.1 kDa
ec_number	3.1.1.4
src_method	man
entity_count	2

type	polypeptide(L)
strand_id	A,B
atom_count	1917

CRYSTAL STRUCTURE OF A CALCIUM-INDEPENDENT PHOSPHOLIPASELIKE MYOTOXIC PROTEIN FROM BOTHROPS ASPER VENOM

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (2)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Bothrops asper
common_name	terciopelo
ncbi_taxonomy_id	8722

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	27

fit	/app/data/saxs_computation/cl/1clp/1clp.fit
pddf	/app/data/pr_computation/cl/1clp/1clp.pr.out
profile	/app/data/saxs_computation/cl/1clp/1clp.dat