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1cs6

N-TERMINAL FRAGMENT OF AXONIN-1 FROM CHICKEN

Method: X-RAY DIFFRACTION D_max: 97.9 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1cs6
deposition_date	1999-08-17
title	N-TERMINAL FRAGMENT OF AXONIN-1 FROM CHICKEN
keywords	NEURAL CELL ADHESION, CELL ADHESION; CELL ADHESION
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	29.14 Å
rg_electron	28.59 Å
i0	30883400.00
molecular_weight	42625.0 kDa
excluded_volume	53040 Å³
envelope_volume	69727 Å³
shell_volume	21485 Å³
envelope_diameter	100.0 Å
shell_rg	34.18 Å
envelope_rg	28.09 Å
shape_rg	28.56 Å
total_rg	29.25 Å
total_atoms	3005
n_residues	382
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	97.9 Å
rg_real	29.30 Å
rg_real_error	1.02 Å
i0_real	3.0880e+07
i0_real_error	4.9600e+05
rg_reciprocal	29.23 Å
i0_reciprocal	30880000.0000
total_estimate	0.8662
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	27.2 Å
skewness	0.388
kurtosis	-0.551
angular_range	— – 0.2700 Å⁻¹
current_alpha	0.0000
highest_alpha	2669000.0000
n_real_points	55
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.875; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.782; Smooth: 0.850

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	AXONIN-1
formula_weight	42602.7 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	3362

RSYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA

Source

organism	Gallus gallus
common_name	chicken
ncbi_taxonomy_id	9031
host_organism	Escherichia coli

Entity 2 non-polymer

description	GLYCEROL
formula_weight	92.1 kDa
src_method	syn
entity_count	1

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	357

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6. Citations (1)

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length_a	60.583 Å
length_b	45.540 Å
length_c	99.548 Å
angle_alpha	90.00 °
angle_beta	96.14 °
angle_gamma	90.00 °
z_pdb	2

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	1.800 Å
resolution_low	20.000 Å
r_factor	0.2260
r_work	0.2260
r_free	0.2570

fit	/app/data/saxs_computation/cs/1cs6/1cs6.fit
pddf	/app/data/pr_computation/cs/1cs6/1cs6.pr.out
profile	/app/data/saxs_computation/cs/1cs6/1cs6.dat

N-TERMINAL FRAGMENT OF AXONIN-1 FROM CHICKEN

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction