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1ct5

CRYSTAL STRUCTURE OF YEAST HYPOTHETICAL PROTEIN YBL036C-SELENOMET CRYSTAL

Method: X-RAY DIFFRACTION D_max: 64.9 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1ct5
deposition_date	1999-08-18
title	CRYSTAL STRUCTURE OF YEAST HYPOTHETICAL PROTEIN YBL036C-SELENOMET CRYSTAL
keywords	;TIM BARREL, YEAST, PYRIDOXAL-5'-PHOSPHATE, SELENOMETHIONINE, MAD, STRUCTURAL GENOMICS, PSI, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC ;; STRUCTURAL GENOMICS
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	18.68 Å
rg_electron	17.61 Å
i0	11916800.00
molecular_weight	26126.0 kDa
excluded_volume	32818 Å³
envelope_volume	37705 Å³
shell_volume	17779 Å³
envelope_diameter	61.1 Å
shell_rg	23.75 Å
envelope_rg	17.98 Å
shape_rg	17.64 Å
total_rg	18.46 Å
total_atoms	1827
n_residues	225
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	64.9 Å
rg_real	18.59 Å
rg_real_error	0.48 Å
i0_real	1.1920e+07
i0_real_error	1.5310e+05
rg_reciprocal	18.61 Å
i0_reciprocal	11920000.0000
total_estimate	0.7864
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	22.2 Å
skewness	0.208
kurtosis	-0.405
angular_range	— – 0.4250 Å⁻¹
current_alpha	0.0000
highest_alpha	4160000.0000
n_real_points	74
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.744; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.990; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	PROTEIN (YEAST HYPOTHETICAL PROTEIN, SELENOMET)
formula_weight	29173.7 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	2031

STGITYDEDRKTQLIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGTSLKLSMGMSADFREAIRQGTAEVRIGTDIFGARPPKNEARII

Source

organism	Saccharomyces cerevisiae
common_name	;baker's yeast ;
ncbi_taxonomy_id	4932
host_organism	Saccharomyces cerevisiae

Entity 2 non-polymer

description	PYRIDOXAL-5'-PHOSPHATE
formula_weight	247.1 kDa
src_method	syn
entity_count	1

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	204

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6. Citations (1)

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length_a	49.052 Å
length_b	65.823 Å
length_c	93.052 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

resolution	2.000 Å
resolution_low	12.500 Å
r_factor	—
r_work	0.1960
r_free	0.2450

fit	/app/data/saxs_computation/ct/1ct5/1ct5.fit
pddf	/app/data/pr_computation/ct/1ct5/1ct5.pr.out
profile	/app/data/saxs_computation/ct/1ct5/1ct5.dat

CRYSTAL STRUCTURE OF YEAST HYPOTHETICAL PROTEIN YBL036C-SELENOMET CRYSTAL

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction