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1d0l

THE ESCHERICHIA COLI LYTIC TRANSGLYCOSYLASE SLT35 IN COMPLEX WITH BULGECIN A

Method: X-RAY DIFFRACTION D_max: 81.5 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1d0l
deposition_date	1999-09-12
title	THE ESCHERICHIA COLI LYTIC TRANSGLYCOSYLASE SLT35 IN COMPLEX WITH BULGECIN A
keywords	ALPHA-HELICAL PROTEIN WITH A FIVE STRANDED ANTI-PARALLEL BETA-SHEET, GLYCOSYL TRANSFERASE, EF-HAND, TRANSFERASE; TRANSFERASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	22.95 Å
rg_electron	21.99 Å
i0	22465600.00
molecular_weight	35762.0 kDa
excluded_volume	44536 Å³
envelope_volume	53243 Å³
shell_volume	20953 Å³
envelope_diameter	83.1 Å
shell_rg	28.01 Å
envelope_rg	22.50 Å
shape_rg	21.97 Å
total_rg	22.81 Å
total_atoms	2523
n_residues	314
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	81.5 Å
rg_real	23.03 Å
rg_real_error	0.78 Å
i0_real	2.2470e+07
i0_real_error	3.1850e+05
rg_reciprocal	23.01 Å
i0_reciprocal	22470000.0000
total_estimate	0.8503
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	23.8 Å
skewness	0.469
kurtosis	-0.143
angular_range	— – 0.3450 Å⁻¹
current_alpha	0.0000
highest_alpha	5224000.0000
n_real_points	66
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.728; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.887; Smooth: 0.982

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	35KD SOLUBLE LYTIC TRANSGLYCOSYLASE
formula_weight	36079.7 kDa
mutation	L40M, L41V
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	2857

MVEPQHNVMQMGGDFANNPNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQAPTTSVKPPSGPNGAWLRYRKKFITPDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGIIGVETRWGRVMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFAGAMGYGQFMPSSYKQYAVDFSGDGHINLWDPVDAIGSVANYFKAHGWVKGDQVAVMANGQAPGLPNGFKTKYSISQLAAAGLTPQQPLGNHQQASLLRLDVGTGYQYWYGLPNFYTITRYNHSTHYAMAVWQLGQAVALARVQ

Source

organism	Escherichia coli
ncbi_taxonomy_id	562
host_organism	Escherichia coli

Entity 2 non-polymer

description	CALCIUM ION
formula_weight	40.1 kDa
src_method	syn
entity_count	1

Entity 3 non-polymer

description	4-O-(4-O-SULFONYL-N-ACETYLGLUCOSAMININYL)-5-METHYLHYDROXY-L-PROLINE-TAURINE
formula_weight	552.6 kDa
src_method	syn
entity_count	1

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	286

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6. Citations (1)

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length_a	58.395 Å
length_b	67.785 Å
length_c	97.735 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

resolution	1.970 Å
resolution_low	20.000 Å
r_factor	0.1700
r_work	0.1680
r_free	0.2000

fit	/app/data/saxs_computation/d0/1d0l/1d0l.fit
pddf	/app/data/pr_computation/d0/1d0l/1d0l.pr.out
profile	/app/data/saxs_computation/d0/1d0l/1d0l.dat

THE ESCHERICHIA COLI LYTIC TRANSGLYCOSYLASE SLT35 IN COMPLEX WITH BULGECIN A

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction