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1d1u

;USE OF AN N-TERMINAL FRAGMENT FROM MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE TO FACILITATE CRYSTALLIZATION AND ANALYSIS OF A PSEUDO-16-MER DNA MOLECULE CONTAINING G-A MISPAIRS ;

Method: X-RAY DIFFRACTION D_max: 73.5 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1d1u
deposition_date	1999-09-21
title	;USE OF AN N-TERMINAL FRAGMENT FROM MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE TO FACILITATE CRYSTALLIZATION AND ANALYSIS OF A PSEUDO-16-MER DNA MOLECULE CONTAINING G-A MISPAIRS ;
keywords	;G-A MISPAIR, SYN-ADENINE, NUCLEIC ACID, PROTEIN-DNA COMPLEX, SINGLE-STRAND OVERHANG, REVERSE TRANSCRIPTASE, MOLONEY MURINE LEUKEMIA VIRUS, HYDROLASE-DNA COMPLEX ;; HYDROLASE/DNA
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	23.14 Å
rg_electron	21.76 Å
i0	22356400.00
molecular_weight	33762.0 kDa
excluded_volume	41248 Å³
envelope_volume	52005 Å³
shell_volume	20418 Å³
envelope_diameter	74.4 Å
shell_rg	27.86 Å
envelope_rg	21.82 Å
shape_rg	21.71 Å
total_rg	22.66 Å
total_atoms	2365
n_residues	271
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	73.5 Å
rg_real	23.09 Å
rg_real_error	0.39 Å
i0_real	2.2360e+07
i0_real_error	2.7650e+05
rg_reciprocal	23.10 Å
i0_reciprocal	22360000.0000
total_estimate	0.9110
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	26.0 Å
skewness	0.212
kurtosis	-0.539
angular_range	— – 0.3450 Å⁻¹
current_alpha	0.0000
highest_alpha	2213000.0000
n_real_points	66
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.952; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.995; Smooth: 0.989

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	;DNA (5'-D(CPTPCPGPTPG)-3') ;
formula_weight	1800.2 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	B
atom_count	2552

CTCGTG

Entity 2 polymer

description	;DNA (5'-D(APCPGPGPCPAPCPGPAPG)-3') ;
formula_weight	3079.0 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	C

ACGGCACGAG

Entity 3 polymer

description	PROTEIN (REVERSE TRANSCRIPTASE)
formula_weight	28934.3 kDa
ec_number	2.7.7.7
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A

TWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQR

Source

organism	Moloney murine leukemia virus
ncbi_taxonomy_id	11801
host_organism	Escherichia coli

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	175

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6. Citations (2)

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length_a	54.738 Å
length_b	145.491 Å
length_c	46.737 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 21 21 2
int_tables_number	18
crystal_system	—

resolution	2.300 Å
resolution_low	50.000 Å
r_factor	0.2300
r_work	0.2300
r_free	0.2860

fit	/app/data/saxs_computation/d1/1d1u/1d1u.fit
pddf	/app/data/pr_computation/d1/1d1u/1d1u.pr.out
profile	/app/data/saxs_computation/d1/1d1u/1d1u.dat

;USE OF AN N-TERMINAL FRAGMENT FROM MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE TO FACILITATE CRYSTALLIZATION AND ANALYSIS OF A PSEUDO-16-MER DNA MOLECULE CONTAINING G-A MISPAIRS ;

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

Source

Entity 4 water

6. Citations (2)

7. Files & Curves (10)

Files (7)

Curves (3)