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1d2e

CRYSTAL STRUCTURE OF MITOCHONDRIAL EF-TU IN COMPLEX WITH GDP

Method: X-RAY DIFFRACTION D_max: 149.1 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1d2e
deposition_date	1999-09-23
title	CRYSTAL STRUCTURE OF MITOCHONDRIAL EF-TU IN COMPLEX WITH GDP
keywords	G-PROTEIN, BETA-BARREL, RNA BINDING PROTEIN; RNA BINDING PROTEIN
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	45.99 Å
rg_electron	45.98 Å
i0	463360000.00
molecular_weight	176760.0 kDa
excluded_volume	221240 Å³
envelope_volume	305650 Å³
shell_volume	56919 Å³
envelope_diameter	155.0 Å
shell_rg	48.92 Å
envelope_rg	44.71 Å
shape_rg	45.97 Å
total_rg	46.13 Å
total_atoms	12396
n_residues	1588
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	149.1 Å
rg_real	46.22 Å
rg_real_error	1.19 Å
i0_real	4.6340e+08
i0_real_error	8.3320e+06
rg_reciprocal	46.00 Å
i0_reciprocal	463200000.0000
total_estimate	0.8142
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	43.8 Å
skewness	0.365
kurtosis	-0.648
angular_range	— – 0.1700 Å⁻¹
current_alpha	0.0000
highest_alpha	29370000.0000
n_real_points	35
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.869; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.975; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	ELONGATION FACTOR TU (EF-TU)
formula_weight	43791.4 kDa
src_method	nat
entity_count	4

Polymer

type	polypeptide(L)
strand_id	A,B,C,D
atom_count	13597

KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILRQPMILEKGQRFTLRDGNRTIGTGLVTDTPAMTEEDKNIKW

Entity 2 non-polymer

description	MAGNESIUM ION
formula_weight	24.3 kDa
src_method	syn
entity_count	4

Entity 3 non-polymer

description	GUANOSINE-5'-DIPHOSPHATE
formula_weight	443.2 kDa
src_method	syn
entity_count	4

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	1201

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6. Citations (3)

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length_a	59.090 Å
length_b	119.780 Å
length_c	128.890 Å
angle_alpha	90.00 °
angle_beta	96.97 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	1.940 Å
resolution_low	34.700 Å
r_factor	0.2370
r_work	0.2370
r_free	0.2570

fit	/app/data/saxs_computation/d2/1d2e/1d2e.fit
pddf	/app/data/pr_computation/d2/1d2e/1d2e.pr.out
profile	/app/data/saxs_computation/d2/1d2e/1d2e.dat

CRYSTAL STRUCTURE OF MITOCHONDRIAL EF-TU IN COMPLEX WITH GDP

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction