SAXSdb — 1d8s

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1. Structure Basics

entry_id	1d8s
deposition_date	1999-10-25
title	ESCHERICHIA COLI F1 ATPASE
keywords	HYDROLASE; HYDROLASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	43.02 Å
rg_electron	42.46 Å
i0	1154570000.00
molecular_weight	172200.0 kDa
excluded_volume	169190 Å³
envelope_volume	434420 Å³
shell_volume	84094 Å³
envelope_diameter	157.3 Å
shell_rg	49.58 Å
envelope_rg	40.43 Å
shape_rg	42.44 Å
total_rg	42.79 Å
total_atoms	12282
n_residues	3070
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	136.7 Å
rg_real	42.73 Å
rg_real_error	0.82 Å
i0_real	1.1550e+09
i0_real_error	1.9040e+07
rg_reciprocal	43.02 Å
i0_reciprocal	1155000000.0000
total_estimate	0.8795
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	55.4 Å
skewness	0.095
kurtosis	-0.411
angular_range	— – 0.1850 Å⁻¹
current_alpha	0.0000
highest_alpha	212600000.0000
n_real_points	38
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.845; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.952; Smooth: 0.943

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	F1 ATPASE (ALPHA SUBUNIT)
formula_weight	41889.6 kDa
ec_number	3.6.1.34
src_method	man
entity_count	3

Polymer

type	polypeptide(L)
strand_id	A,B,C
atom_count	12283

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Source

organism	Escherichia coli
ncbi_taxonomy_id	562
host_organism	Escherichia coli

Entity 2 polymer

description	F1 ATPASE (BETA SUBUNIT)
formula_weight	39762.0 kDa
ec_number	3.6.1.34
src_method	man
entity_count	3

Polymer

type	polypeptide(L)
strand_id	D,E,F

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Source

organism	Escherichia coli
ncbi_taxonomy_id	562
host_organism	Escherichia coli

Entity 3 polymer

description	F1 ATPASE (GAMMA SUBUNIT)
formula_weight	18230.4 kDa
ec_number	3.6.1.34
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	G

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Source

organism	Escherichia coli
ncbi_taxonomy_id	562
host_organism	Escherichia coli

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6. Citations (2)

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length_a	180.680 Å
length_b	197.520 Å
length_c	237.900 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	24

space_group	C 2 2 21
int_tables_number	20
crystal_system	—

resolution	4.400 Å
resolution_low	25.000 Å
r_factor	—
r_work	—
r_free	—

fit	/app/data/saxs_computation/d8/1d8s/1d8s.fit
pddf	/app/data/pr_computation/d8/1d8s/1d8s.pr.out
profile	/app/data/saxs_computation/d8/1d8s/1d8s.dat

ESCHERICHIA COLI F1 ATPASE

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 polymer

Polymer

Source

6. Citations (2)

7. Files & Curves (10)

Files (7)

Curves (3)