1d9n
SOLUTION STRUCTURE OF THE METHYL-CPG-BINDING DOMAIN OF THE METHYLATION-DEPENDENT TRANSCRIPTIONAL REPRESSOR MBD1/PCM1
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 1d9n |
| deposition_date | 1999-10-28 |
| title | SOLUTION STRUCTURE OF THE METHYL-CPG-BINDING DOMAIN OF THE METHYLATION-DEPENDENT TRANSCRIPTIONAL REPRESSOR MBD1/PCM1 |
| keywords | MBD, METHYL-CPG, PCM1, METHYLATION, DNA BINDING DOMAIN, GENE REGULATION; GENE REGULATION |
| method | SOLUTION NMR |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 13.14 Å |
| rg_electron | 12.88 Å |
| i0 | 654334000.00 |
| molecular_weight | 212690.0 kDa |
| excluded_volume | 265020 ų |
| envelope_volume | 50492 ų |
| shell_volume | 21876 ų |
| envelope_diameter | 64.0 Å |
| shell_rg | 25.91 Å |
| envelope_rg | 19.10 Å |
| shape_rg | 12.80 Å |
| total_rg | 13.56 Å |
| total_atoms | 29575 |
| n_residues | 1875 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 34.8 Å |
| rg_real | 12.51 Å |
| rg_real_error | 0.03 Å |
| i0_real | 6.2480e+08 |
| i0_real_error | 3.9920e+06 |
| rg_reciprocal | 13.16 Å |
| i0_reciprocal | 654300000.0000 |
| total_estimate | 0.6812 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 1 |
| r_peak_primary | 15.0 Å |
| skewness | 0.267 |
| kurtosis | -0.327 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 3.1490 |
| highest_alpha | 8365000.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.002; Oscil: 0.972; Stabil: 0.986; Sysdev: 0.000; Positv: 1.000; Valcen: 0.984; Smooth: 0.000 |