E.COLI GDP-MANNOSE 4,6-DEHYDRATASE

Method: X-RAY DIFFRACTION D_max: 73.1 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1db3
deposition_date	1999-11-02
title	E.COLI GDP-MANNOSE 4,6-DEHYDRATASE
keywords	DEHYDRATASE, NADP, GDP-MANNOSE, GDP-FUCOSE, LYASE; LYASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	22.13 Å
rg_electron	21.31 Å
i0	23571900.00
molecular_weight	37460.0 kDa
excluded_volume	47061 Å³
envelope_volume	55399 Å³
shell_volume	22079 Å³
envelope_diameter	73.9 Å
shell_rg	27.86 Å
envelope_rg	21.46 Å
shape_rg	21.29 Å
total_rg	22.22 Å
total_atoms	2641
n_residues	335
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	73.1 Å
rg_real	22.14 Å
rg_real_error	0.41 Å
i0_real	2.3570e+07
i0_real_error	3.0160e+05
rg_reciprocal	22.14 Å
i0_reciprocal	23570000.0000
total_estimate	0.8815
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	25.1 Å
skewness	0.394
kurtosis	-0.292
angular_range	— – 0.3600 Å⁻¹
current_alpha	0.0000
highest_alpha	5700000.0000
n_real_points	68
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.837; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.971; Smooth: 0.973

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (1)

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length_a	149.600 Å
length_b	149.600 Å
length_c	102.600 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	12

space_group	P 63 2 2
int_tables_number	182
crystal_system	—

resolution	2.300 Å
resolution_low	30.000 Å
r_factor	0.2050
r_work	0.2050
r_free	0.2320

description	GDP-MANNOSE 4,6-DEHYDRATASE
formula_weight	41967.5 kDa
ec_number	4.2.1.47
src_method	man
entity_count	1

type	polypeptide(L)
strand_id	A
atom_count	2754

E.COLI GDP-MANNOSE 4,6-DEHYDRATASE

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Escherichia coli
ncbi_taxonomy_id	562
host_organism	Escherichia coli

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	113

fit	/app/data/saxs_computation/db/1db3/1db3.fit
pddf	/app/data/pr_computation/db/1db3/1db3.pr.out
profile	/app/data/saxs_computation/db/1db3/1db3.dat