CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA RIBOSOME RECYCLING FACTOR, RRF

Method: X-RAY DIFFRACTION D_max: 77.9 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1dd5
deposition_date	1999-11-08
title	CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA RIBOSOME RECYCLING FACTOR, RRF
keywords	THREE-HELIX BUNDLE, BETA-ALPHA-BETA SANDWICH, RIBOSOME; RIBOSOME
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	22.72 Å
rg_electron	22.21 Å
i0	7726710.00
molecular_weight	21499.0 kDa
excluded_volume	27372 Å³
envelope_volume	33776 Å³
shell_volume	14096 Å³
envelope_diameter	76.9 Å
shell_rg	26.46 Å
envelope_rg	22.38 Å
shape_rg	22.23 Å
total_rg	22.81 Å
total_atoms	1512
n_residues	184
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	77.9 Å
rg_real	22.97 Å
rg_real_error	0.70 Å
i0_real	7.7270e+06
i0_real_error	1.1670e+05
rg_reciprocal	22.91 Å
i0_reciprocal	7726000.0000
total_estimate	0.8087
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	17.7 Å
skewness	0.517
kurtosis	-0.436
angular_range	— – 0.3500 Å⁻¹
current_alpha	0.0000
highest_alpha	2120000.0000
n_real_points	67
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.673; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.550; Smooth: 0.940

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

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6. Citations (3)

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length_a	47.250 Å
length_b	47.250 Å
length_c	297.550 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 43 21 2
int_tables_number	96
crystal_system	—

resolution	2.550 Å
resolution_low	30.000 Å
r_factor	0.2320
r_work	0.2300
r_free	0.2770

description	RIBOSOME RECYCLING FACTOR
formula_weight	21548.0 kDa
src_method	man
entity_count	1

type	polypeptide(L)
strand_id	A
atom_count	1577

CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA RIBOSOME RECYCLING FACTOR, RRF

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Source

Entity 2 non-polymer

Entity 3 water

6. Citations (3)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Thermotoga maritima
ncbi_taxonomy_id	2336
host_organism	Escherichia coli

description	ACETIC ACID
formula_weight	60.1 kDa
src_method	syn
entity_count	2

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	65

fit	/app/data/saxs_computation/dd/1dd5/1dd5.fit
pddf	/app/data/pr_computation/dd/1dd5/1dd5.pr.out
profile	/app/data/saxs_computation/dd/1dd5/1dd5.dat