CRYSTAL STRUCTURE OF E.COLI RIBOSOMAL PROTEIN L25 COMPLEXED WITH A 5S RRNA FRAGMENT AT 1.8 A RESOLUTION

entry_id	1dfu
deposition_date	1999-11-21
title	CRYSTAL STRUCTURE OF E.COLI RIBOSOMAL PROTEIN L25 COMPLEXED WITH A 5S RRNA FRAGMENT AT 1.8 A RESOLUTION
keywords	PROTEIN-RNA COMPLEX, RIBOSOME; RIBOSOME
method	X-RAY DIFFRACTION

rg_guinier	19.28 Å
rg_electron	18.49 Å
i0	18010000.00
molecular_weight	23183.0 kDa
excluded_volume	25143 ų
envelope_volume	32874 ų
shell_volume	15726 ų
envelope_diameter	68.8 Å
shell_rg	23.69 Å
envelope_rg	18.84 Å
shape_rg	18.41 Å
total_rg	19.27 Å
total_atoms	1577
n_residues	132
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	68.2 Å
rg_real	19.31 Å
rg_real_error	0.56 Å
i0_real	1.8010e+07
i0_real_error	2.6640e+05
rg_reciprocal	19.31 Å
i0_reciprocal	18010000.0000
total_estimate	0.8566
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	19.2 Å
skewness	0.361
kurtosis	-0.353
angular_range	— – 0.4100 Å−1
current_alpha	0.0000
highest_alpha	2500000.0000
n_real_points	72
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.778; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.807; Smooth: 0.992

Unit Cell

length_a	75.600 Å
length_b	76.600 Å
length_c	95.100 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

Symmetry

space_group	C 2 2 21
int_tables_number	20
crystal_system	—

Refinement

resolution	1.800 Å
resolution_low	20.000 Å
r_factor	0.2260
r_work	0.2070
r_free	0.2250

Diffraction

temperature

100.0 K

Files (7)

• pr_distribution /app/data/pr_computation/df/1dfu/pr_distribution.json
• pr_output /app/data/pr_computation/df/1dfu/1dfu.pr.out
• pr_plot /app/data/visualization/pr_computation/df/1dfu/1dfu_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/df/1dfu/1dfu.dat
• saxs_fit /app/data/saxs_computation/df/1dfu/1dfu.fit
• saxs_log /app/data/saxs_computation/df/1dfu/1dfu.log
• saxs_plot /app/data/visualization/saxs_computation/df/1dfu/1dfu_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/df/1dfu/1dfu.fit
pddf	/app/data/pr_computation/df/1dfu/1dfu.pr.out
profile	/app/data/saxs_computation/df/1dfu/1dfu.dat