1dkc
SOLUTION STRUCTURE OF PAFP-S, AN ANTIFUNGAL PEPTIDE FROM THE SEEDS OF PHYTOLACCA AMERICANA
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 1dkc |
| deposition_date | 1999-12-07 |
| title | SOLUTION STRUCTURE OF PAFP-S, AN ANTIFUNGAL PEPTIDE FROM THE SEEDS OF PHYTOLACCA AMERICANA |
| keywords | THREE-STRANDS BETA SHEET, ANTIFUNGAL PROTEIN; ANTIFUNGAL PROTEIN |
| method | SOLUTION NMR |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 8.93 Å |
| rg_electron | 9.27 Å |
| i0 | 28503800.00 |
| molecular_weight | 39065.0 kDa |
| excluded_volume | 46910 ų |
| envelope_volume | 8086 ų |
| shell_volume | 7001 ų |
| envelope_diameter | 33.0 Å |
| shell_rg | 15.37 Å |
| envelope_rg | 10.67 Å |
| shape_rg | 9.29 Å |
| total_rg | 9.55 Å |
| total_atoms | 5170 |
| n_residues | 380 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 31.8 Å |
| rg_real | 8.96 Å |
| rg_real_error | 0.27 Å |
| i0_real | 2.8500e+07 |
| i0_real_error | 2.4510e+05 |
| rg_reciprocal | 8.96 Å |
| i0_reciprocal | 28500000.0000 |
| total_estimate | 0.8560 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 10.1 Å |
| skewness | 0.372 |
| kurtosis | -0.316 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 14370.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.800; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.812; Smooth: 0.914 |