BIOSYNTHETIC THIOLASE
Zoogloea ramigera
State in the Current Structure
| Assembly | Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Associated Components | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|
| 1 | Protein homooligomer Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count | Chain A; UniProt 4–391 Chain B; UniProt 4–391 Chain C; UniProt 4–391 Chain D; UniProt 4–391 | Not recorded | SO4 SULFATE ION × 6 COA COENZYME A × 4 | X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 5;294 K;AMMONIUM SULPHATE, LITHIUM SULPHATE, SODIUM ACETATE, pH 5, VAPOR DIFFUSION, HANGING DROP, temperature 294K | Resolution 2.29 Å R-free 0.293 |
Other States of the Same Protein in the Database
Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.
| Other PDB | Difference from Current Entry 1DLV | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 1DLU UNLIGANDED BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA Deposited 1999-12-12 | Different ligand/ion Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
4–391(388 aa)
Chain B
4–391(388 aa)
Chain C
4–391(388 aa)
Chain D
4–391(388 aa)
|
Not recorded | SO4 SULFATE ION × 6 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;294 K;AMMONIUM SULPHATE, LITHIUM SULPHATE, SODIUM ACETATE, pH 5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
|
Resolution 2.25 Å R-free 0.263 |
| 1DM3 ACETYLATED BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA IN COMPLEX WITH ACETYL-COA Deposited 1999-12-13 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
5–392(388 aa)
Fragment:ENTIRE THIOLASE, ACETYLATED AT CYS89
Chain B
5–392(388 aa)
Fragment:ENTIRE THIOLASE, ACETYLATED AT CYS89
Chain C
5–392(388 aa)
Fragment:ENTIRE THIOLASE, ACETYLATED AT CYS89
Chain D
5–392(388 aa)
Fragment:ENTIRE THIOLASE, ACETYLATED AT CYS89
|
Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 6 ACO ACETYL COENZYME *A × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;294 K;0.9 M Ammonium sulfate, 1 M lithium sulfate, 0,1 M sodium acetate, 1 mM DTT, 1mM EDTA, 1mM sodium azide, pH 5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
|
Resolution 2.00 Å R-free 0.256 |
| 1M1O Crystal structure of biosynthetic thiolase, C89A mutant, complexed with acetoacetyl-CoA Deposited 2002-06-20 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
1–391(391 aa)
Chain B
1–391(391 aa)
Chain C
1–391(391 aa)
Chain D
1–391(391 aa)
|
Mutation:C89A Mutation:C89A Mutation:C89A Mutation:C89A | SO4 SULFATE ION × 4 CAA ACETOACETYL-COENZYME A × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5;295 K;lithium sulphate, ammonium sulphate, pH 5.0, VAPOR DIFFUSION, SITTING DROP at 295K
|
Resolution 1.95 Å R-free 0.258 |
| 1M1T Biosynthetic thiolase, Q64A mutant Deposited 2002-06-20 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
1–391(391 aa)
Chain B
1–391(391 aa)
Chain C
1–391(391 aa)
Chain D
1–391(391 aa)
|
Mutation:Q64A Mutation:Q64A Mutation:Q64A Mutation:Q64A | SO4 SULFATE ION × 4 GOL GLYCEROL × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6;295 K;lithium sulphate, ammonium sulphate, pH 6.0, VAPOR DIFFUSION, SITTING DROP at 295K, VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.94 Å R-free 0.245 |
| 1M3K biosynthetic thiolase, inactive C89A mutant Deposited 2002-06-28 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
1–391(391 aa)
Chain B
1–391(391 aa)
Chain C
1–391(391 aa)
Chain D
1–391(391 aa)
|
Mutation:C89A Mutation:C89A Mutation:C89A Mutation:C89A | SO4 SULFATE ION × 4 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5;295 K;lithium sulphate, ammonium sulphate, pH 5.0, VAPOR DIFFUSION, SITTING DROP at 295K
|
Resolution 1.70 Å R-free 0.243 |
| 1M3Z Biosynthetic thiolase, C89A mutant, complexed with acetyl coenzyme A Deposited 2002-07-03 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
1–391(391 aa)
Chain B
1–391(391 aa)
Chain C
1–391(391 aa)
Chain D
1–391(391 aa)
|
Mutation:C89A Mutation:C89A Mutation:C89A Mutation:C89A | SO4 SULFATE ION × 4 ACO ACETYL COENZYME *A × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5;293 K;lithium sulphate, ammonium sulphate, pH 5.0, VAPOR DIFFUSION, SITTING DROP at 293K
|
Resolution 1.87 Å R-free 0.242 |
| 1M4S Biosynthetic thiolase, Cys89 acetylated, unliganded form Deposited 2002-07-03 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
1–391(391 aa)
Chain B
1–391(391 aa)
Chain C
1–391(391 aa)
Chain D
1–391(391 aa)
|
Mutation:C89 acetylated Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:C89 acetylated Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:C89 acetylated Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:C89 acetylated Non-standard monomer:Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 4 GOL GLYCEROL × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5;293 K;lithium sulphate, ammonium sulphate, pH 5.0, VAPOR DIFFUSION, SITTING DROP at 293K
|
Resolution 1.87 Å R-free 0.247 |
| 1M4T Biosynthetic thiolase, Cys89 butyrylated Deposited 2002-07-03 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
1–391(391 aa)
Chain B
1–391(391 aa)
Chain C
1–391(391 aa)
Chain D
1–391(391 aa)
|
Mutation:Cys89 butyrylated Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Cys89 butyrylated Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Cys89 butyrylated Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Cys89 butyrylated Non-standard monomer:Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 4 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;293 K;lithium sulphate, ammonium sulphate, pH 5.0, VAPOR DIFFUSION, SITTING DROP at 293K, VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.77 Å R-free 0.242 |
| 1NL7 Z. ramigera biosynthetic thiolase, acetylated enzyme complexed with CoA at pH 9.5 Deposited 2003-01-06 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
1–391(391 aa)
Chain B
1–391(391 aa)
Chain C
1–391(391 aa)
Chain D
1–391(391 aa)
|
Mutation:Cys89 acetylated Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Cys89 acetylated Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Cys89 acetylated Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Cys89 acetylated Non-standard monomer:Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 4 COA COENZYME A × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5;295 K;lithium sulphate, ammonium sulphate, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 1.90 Å R-free 0.223 |
| 1OU6 Biosynthetic thiolase from Zoogloea ramigera in complex with acetyl-O-pantetheine-11-pivalate Deposited 2003-03-24 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
1–391(391 aa)
Chain B
1–391(391 aa)
Chain C
1–391(391 aa)
Chain D
1–391(391 aa)
|
Mutation:Cys89 hydroxylated Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Cys89 hydroxylated Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Cys89 hydroxylated Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Cys89 hydroxylated Non-standard monomer:Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 4 168 PANTOTHENYL-AMINOETHANOL-ACETATE PIVALIC ACID × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;288 K;ammonium sulfate, lithium sulfate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 288K
|
Resolution 2.07 Å R-free 0.212 |
| 1QFL BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA IN COMPLEX WITH A REACTION INTERMEDIATE. Deposited 1999-04-12 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
4–391(388 aa)
Fragment:RESIDUES 4-392
Chain B
4–391(388 aa)
Fragment:RESIDUES 4-392
Chain C
4–391(388 aa)
Fragment:RESIDUES 4-392
Chain D
4–391(388 aa)
Fragment:RESIDUES 4-392
|
Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 6 COA COENZYME A × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 5;1 M LITHIUM SULPHATE, 0.9 M AMMONIUM SULPHATE, 0.1 M SODIUM ACETATE PH 5.0
A REACTION INTERMEDIATE WAS TRAPPED BY FLASH-FREEZING THE
CRYSTAL AFTER A SHORT SOAK WITH ACETOACETYL-COA SUBSTRATE.
|
Resolution 1.92 Å R-free 0.256 |
| 2VTZ Biosynthetic thiolase from Z. ramigera. Complex of the C89A mutant with coenzyme A. Deposited 2008-05-19 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
2–11(10 aa)
Fragment:RESIDUES 2-392
Chain A
12–392(381 aa)
Fragment:RESIDUES 2-392
Chain B
2–11(10 aa)
Fragment:RESIDUES 2-392
Chain B
12–392(381 aa)
Fragment:RESIDUES 2-392
Chain C
2–11(10 aa)
Fragment:RESIDUES 2-392
Chain C
12–392(381 aa)
Fragment:RESIDUES 2-392
Chain D
2–11(10 aa)
Fragment:RESIDUES 2-392
Chain D
12–392(381 aa)
Fragment:RESIDUES 2-392
|
Mutation:YES Mutation:YES Mutation:YES Mutation:YES Mutation:YES Mutation:YES Mutation:YES Mutation:YES | COA COENZYME A × 4 SO4 SULFATE ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 5;pH 5
|
Resolution 2.30 Å R-free 0.262 |
| 2VU0 Biosynthetic thiolase from Z. ramigera. Complex of the oxidised enzyme with coenzyme A. Deposited 2008-05-19 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
2–392(391 aa)
Fragment:RESIDUES 2-392
Chain B
2–392(391 aa)
Fragment:RESIDUES 2-392
Chain C
2–392(391 aa)
Fragment:RESIDUES 2-392
Chain D
2–392(391 aa)
Fragment:RESIDUES 2-392
|
Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) | COA COENZYME A × 2 GOL GLYCEROL × 1 SO4 SULFATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 5;pH 5
|
Resolution 1.87 Å R-free 0.229 |
| 2VU1 Biosynthetic thiolase from Z. ramigera. Complex of with O-pantheteine- 11-pivalate. Deposited 2008-05-19 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
2–11(10 aa)
Fragment:RESIDUES 2-392
Chain A
12–392(381 aa)
Fragment:RESIDUES 2-392
Chain B
2–11(10 aa)
Fragment:RESIDUES 2-392
Chain B
12–392(381 aa)
Fragment:RESIDUES 2-392
Chain C
2–11(10 aa)
Fragment:RESIDUES 2-392
Chain C
12–392(381 aa)
Fragment:RESIDUES 2-392
Chain D
2–11(10 aa)
Fragment:RESIDUES 2-392
Chain D
12–392(381 aa)
Fragment:RESIDUES 2-392
|
Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) | OPI PANTOTHENYL-AMINOETHANOL-11-PIVALIC ACID × 2 NA SODIUM ION × 1 SO4 SULFATE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 5;pH 5
|
Resolution 1.51 Å R-free 0.247 |
| 2VU2 Biosynthetic thiolase from Z. ramigera. Complex with S-pantetheine-11- pivalate. Deposited 2008-05-19 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
2–11(10 aa)
Fragment:RESIDUES 2-392
Chain A
12–392(381 aa)
Fragment:RESIDUES 2-392
Chain B
2–11(10 aa)
Fragment:RESIDUES 2-392
Chain B
12–392(381 aa)
Fragment:RESIDUES 2-392
Chain C
2–11(10 aa)
Fragment:RESIDUES 2-392
Chain C
12–392(381 aa)
Fragment:RESIDUES 2-392
Chain D
2–11(10 aa)
Fragment:RESIDUES 2-392
Chain D
12–392(381 aa)
Fragment:RESIDUES 2-392
|
Not recorded | PN5 (3R)-3-hydroxy-2,2-dimethyl-4-oxo-4-({3-oxo-3-[(2-sulfanylethyl)amino]propyl}amino)butyl 2,2-dimethylpropanoate × 2 SO4 SULFATE ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 5;pH 5
|
Resolution 2.65 Å R-free 0.286 |
| 2WKT BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. COMPLEX OF THE N316A MUTANT WITH COENZYME A. Deposited 2009-06-18 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
2–11(10 aa)
Fragment:RESIDUES 2-11,12-392
Chain A
12–392(381 aa)
Fragment:RESIDUES 2-11,12-392
Chain B
2–11(10 aa)
Fragment:RESIDUES 2-11,12-392
Chain B
12–392(381 aa)
Fragment:RESIDUES 2-11,12-392
Chain C
2–11(10 aa)
Fragment:RESIDUES 2-11,12-392
Chain C
12–392(381 aa)
Fragment:RESIDUES 2-11,12-392
Chain D
2–11(10 aa)
Fragment:RESIDUES 2-11,12-392
Chain D
12–392(381 aa)
Fragment:RESIDUES 2-11,12-392
|
Mutation:YES Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:YES Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:YES Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:YES Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:YES Mutation:YES Mutation:YES Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:YES Non-standard monomer:Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 9 K POTASSIUM ION × 1 CL CHLORIDE ION × 1 COA COENZYME A × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5;1.9 M (NH4)2SO4, 0.1 M SODIUM CITRATE (PH 6.5), 1 MM EDTA, 1 MM NAN3, 1 MM DTT.
|
Resolution 2.00 Å R-free 0.236 |
| 2WKU BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. THE N316H MUTANT. Deposited 2009-06-18 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
2–11(10 aa)
Fragment:RESIDUES 2-11,12-392
Chain A
12–392(381 aa)
Fragment:RESIDUES 2-11,12-392
Chain B
2–11(10 aa)
Fragment:RESIDUES 2-11,12-392
Chain B
12–392(381 aa)
Fragment:RESIDUES 2-11,12-392
Chain C
2–11(10 aa)
Fragment:RESIDUES 2-11,12-392
Chain C
12–392(381 aa)
Fragment:RESIDUES 2-11,12-392
Chain D
2–11(10 aa)
Fragment:RESIDUES 2-11,12-392
Chain D
12–392(381 aa)
Fragment:RESIDUES 2-11,12-392
|
Mutation:YES Mutation:YES Mutation:YES Mutation:YES Mutation:YES Mutation:YES Mutation:YES Mutation:YES | SO4 SULFATE ION × 9 DNO D-mannose × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 5.5;0.95 M LI2SO4, 1.3 (NH4)2SO4, 0.1 M SODIUM CITRATE (PH 5.5), 1 MM EDTA, 1 MM NAN, 1 MM DTT
|
Resolution 2.30 Å R-free 0.258 |
| 2WKV BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. COMPLEX OF THE N316D MUTANT WITH COENZYME A. Deposited 2009-06-18 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
2–11(10 aa)
Fragment:2-11,12-292
Chain A
12–392(381 aa)
Fragment:2-11,12-292
Chain B
2–11(10 aa)
Fragment:2-11,12-292
Chain B
12–392(381 aa)
Fragment:2-11,12-292
Chain C
2–11(10 aa)
Fragment:2-11,12-292
Chain C
12–392(381 aa)
Fragment:2-11,12-292
Chain D
2–11(10 aa)
Fragment:2-11,12-292
Chain D
12–392(381 aa)
Fragment:2-11,12-292
|
Mutation:YES Mutation:YES Mutation:YES Mutation:YES Mutation:YES Mutation:YES Mutation:YES Mutation:YES | SO4 SULFATE ION × 10 NA SODIUM ION × 2 COA COENZYME A × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 5.7;1.9 M (NH4)2SO4, 0.1 M MES (PH 5.7), 1 MM EDTA, 1 MM NAN3 AND 1 MM DTT
|
Resolution 2.50 Å R-free 0.238 |
| 2WL4 BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. COMPLEX OF THE H348A MUTANT WITH COENZYME A. Deposited 2009-06-22 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
2–11(10 aa)
Fragment:RESIDUES 2-11,12-392
Chain A
12–392(381 aa)
Fragment:RESIDUES 2-11,12-392
Chain B
2–11(10 aa)
Fragment:RESIDUES 2-11,12-392
Chain B
12–392(381 aa)
Fragment:RESIDUES 2-11,12-392
Chain C
2–11(10 aa)
Fragment:RESIDUES 2-11,12-392
Chain C
12–392(381 aa)
Fragment:RESIDUES 2-11,12-392
Chain D
2–11(10 aa)
Fragment:RESIDUES 2-11,12-392
Chain D
12–392(381 aa)
Fragment:RESIDUES 2-11,12-392
|
Mutation:YES Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:YES Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:YES Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:YES Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:YES Mutation:YES Mutation:YES Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:YES Non-standard monomer:Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 25 COA COENZYME A × 2 CL CHLORIDE ION × 3 NA SODIUM ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 5.5;0.95 M LI2SO4, 1.2 M (NH4)2SO4, 0.1 M SODIUM CITRATE (PH 5.5), 1 MM EDTA, 1 MM NAN3 AND 1 MM DTT
|
Resolution 1.80 Å R-free 0.270 |
| 2WL5 BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. COMPLEX OF THE H348N MUTANT WITH COENZYME A. Deposited 2009-06-22 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
2–11(10 aa)
Fragment:RESIDUES 2-11,12-392
Chain A
12–392(381 aa)
Fragment:RESIDUES 2-11,12-392
Chain B
2–11(10 aa)
Fragment:RESIDUES 2-11,12-392
Chain B
12–392(381 aa)
Fragment:RESIDUES 2-11,12-392
Chain C
2–11(10 aa)
Fragment:RESIDUES 2-11,12-392
Chain C
12–392(381 aa)
Fragment:RESIDUES 2-11,12-392
Chain D
2–11(10 aa)
Fragment:RESIDUES 2-11,12-392
Chain D
12–392(381 aa)
Fragment:RESIDUES 2-11,12-392
|
Mutation:YES Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:YES Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:YES Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:YES Non-standard monomer:Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 14 DNO D-mannose × 4 COA COENZYME A × 2 NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 5.5;0.75 M LI2SO4, 1.7 M (NH4)2SO4, 0.1 M SODIUM CITRATE (PH 5.5), 1 MM EDTA, 1 MM NAN3 AND 1 MM DTT
|
Resolution 1.80 Å R-free 0.257 |
| 2WL6 BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. THE N316H-H348N MUTANT. Deposited 2009-06-22 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
2–11(10 aa)
Fragment:RESIDUES 2-11,12-392
Chain A
12–392(381 aa)
Fragment:RESIDUES 2-11,12-392
Chain B
2–11(10 aa)
Fragment:RESIDUES 2-11,12-392
Chain B
12–392(381 aa)
Fragment:RESIDUES 2-11,12-392
Chain C
2–11(10 aa)
Fragment:RESIDUES 2-11,12-392
Chain C
12–392(381 aa)
Fragment:RESIDUES 2-11,12-392
Chain D
2–11(10 aa)
Fragment:RESIDUES 2-11,12-392
Chain D
12–392(381 aa)
Fragment:RESIDUES 2-11,12-392
|
Mutation:YES Mutation:YES Mutation:YES Mutation:YES Mutation:YES Mutation:YES Mutation:YES Mutation:YES | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5;0.167 M SODIUM CITRATE (PH 6.5), 1.58 M (NH4)2SO4, 1 MM EDTA, 1 MM NAN3 AND 1 MM DTT
|
Resolution 2.98 Å R-free 0.291 |
| 7LBZ Zoogloea ramigera biosynthetic thiolase Y218E mutant Deposited 2021-01-09 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
2–392(391 aa)
Chain B
2–392(391 aa)
Chain C
2–392(391 aa)
Chain D
2–392(391 aa)
|
Mutation:Y218E Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Y218E Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Y218E Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Y218E Non-standard monomer:Yes (specific site not provided by mmCIF) | COA COENZYME A × 4 SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 5.5;289 K;1 M (NH4)2SO4, 1 M Li2SO4, 0.1 M sodium citrate pH 5.5, 1 mM DTT, 1 mM EDTA, 1 mM NaN3
|
Resolution 2.60 Å R-free 0.320 |
| 7LCA Zoogloea ramigera biosynthetic thiolase Y218E/delH221 mutant Deposited 2021-01-10 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
2–392(391 aa)
Chain B
2–392(391 aa)
Chain C
2–392(391 aa)
Chain D
2–392(391 aa)
|
Mutation:Y218E Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Y218E Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Y218E Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Y218E Non-standard monomer:Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 7 COA COENZYME A × 4 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 5.5;289 K;1.3 M (NH4)2SO4, 0.5 M Li2SO4, 0.1 M sodium citrate pH 5.5, 1 mM DTT, 1 mM EDTA, 1 mM NaN3
|
Resolution 2.00 Å R-free 0.283 |
| 7LCL Zoogloea ramigera biosynthetic thiolase Q183Y mutant Deposited 2021-01-11 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
2–392(391 aa)
Chain B
2–392(391 aa)
Chain C
2–392(391 aa)
Chain D
2–392(391 aa)
|
Mutation:Q183Y Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Q183Y Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Q183Y Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Q183Y Non-standard monomer:Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 11 COA COENZYME A × 4 NH4 AMMONIUM ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 5.5;289 K;0.2 M (NH4)2SO4, 1 M Li2SO4, 0.1 M sodium citrate pH 5.5, 1 mM DTT, 1 mM EDTA, 1 mM NaN3
|
Resolution 2.29 Å R-free 0.265 |
| 7LD2 Zoogloea ramigera biosynthetic thiolase Q183Y mutant, RbCl soak Deposited 2021-01-12 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
2–392(391 aa)
Chain B
2–392(391 aa)
Chain C
2–392(391 aa)
Chain D
2–392(391 aa)
|
Mutation:Q183Y Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Q183Y Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Q183Y Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Q183Y Non-standard monomer:Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 4 COA COENZYME A × 4 RB RUBIDIUM ION × 4 CL CHLORIDE ION × 10 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 5.5;289 K;0.4 M (NH4)2SO4, 0.5 M Li2SO4, 0.1 M sodium citrate pH 5.5, 1 mM DTT, 1 mM EDTA, 1 mM NaN3
|
Resolution 2.80 Å R-free 0.271 |
| 7LDC Zoogloea ramigera biosynthetic thiolase Q183Y/Y218E mutant Deposited 2021-01-13 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
2–392(391 aa)
Chain B
2–392(391 aa)
Chain C
2–392(391 aa)
Chain D
2–392(391 aa)
|
Mutation:Q183Y/Y218E Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Q183Y/Y218E Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Q183Y/Y218E Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Q183Y/Y218E Non-standard monomer:Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 10 COA COENZYME A × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 5.5;289 K;0.44 M (NH4)2SO4, 1.76 M Li2SO4, 0.1 M sodium citrate pH 5.5, 1 mM DTT, 1 mM EDTA, 1 mM NaN3
|
Resolution 2.50 Å R-free 0.260 |
| 7LDT Zoogloea ramigera biosynthetic thiolase Q183Y/Y218E mutant, RbCl soak Deposited 2021-01-14 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
2–392(391 aa)
Chain B
2–392(391 aa)
Chain C
2–392(391 aa)
Chain D
2–392(391 aa)
|
Mutation:Q183Y/Y218E Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Q183Y/Y218E Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Q183Y/Y218E Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Q183Y/Y218E Non-standard monomer:Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 4 COA COENZYME A × 4 RB RUBIDIUM ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 5.5;289 K;0.44 M (NH4)2SO4, 1.76 M Li2SO4, 0.1 M sodium citrate pH 5.5, 1 mM DTT, 1 mM EDTA, 1 mM NaN3
|
Resolution 2.60 Å R-free 0.238 |
| 7LDU Zoogloea ramigera biosynthetic thiolase Q183Y/Y218E/delH221 mutant Deposited 2021-01-14 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
2–392(391 aa)
Chain B
2–392(391 aa)
Chain C
2–392(391 aa)
Chain D
2–392(391 aa)
|
Mutation:Q183Y, Y218E Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Q183Y, Y218E Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Q183Y, Y218E Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Q183Y, Y218E Non-standard monomer:Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 8 COA COENZYME A × 4 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 5.5;289 K;1.8 M Li2SO4, 0.1 M sodium citrate pH 5.5, 1 mM DTT, 1 mM EDTA, 1 mM NaN3
|
Resolution 2.85 Å R-free 0.282 |
| 7LDV Zoogloea ramigera biosynthetic thiolase Q183Y/Y218E/delH221/S227K mutant Deposited 2021-01-14 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
2–392(391 aa)
Chain B
2–392(391 aa)
Chain C
2–392(391 aa)
Chain D
2–392(391 aa)
|
Mutation:Q183Y, Y218E, S227K Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Q183Y, Y218E, S227K Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Q183Y, Y218E, S227K Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Q183Y, Y218E, S227K Non-standard monomer:Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 10 COA COENZYME A × 4 NH4 AMMONIUM ION × 4 CL CHLORIDE ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 5.5;289 K;1.17 M (NH4)2SO4, 0.78 M Li2SO4, 0.1 M sodium citrate pH 5.5, 1 mM DTT, 1 mM EDTA, 1 mM NaN3
|
Resolution 2.90 Å R-free 0.234 |
| 7LDW Zoogloea ramigera biosynthetic thiolase Q183Y/Y218E/delH221/S227K/G248T mutant Deposited 2021-01-14 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
2–392(391 aa)
Chain B
2–392(391 aa)
Chain C
2–392(391 aa)
Chain D
2–392(391 aa)
|
Mutation:Q183Y, Y218E, S227K, G248T Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Q183Y, Y218E, S227K, G248T Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Q183Y, Y218E, S227K, G248T Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:Q183Y, Y218E, S227K, G248T Non-standard monomer:Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 10 COA COENZYME A × 4 NH4 AMMONIUM ION × 3 GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 5.5;289 K;1.32 M (NH4)2SO4, 0.88 M Li2SO4, 0.1 M sodium citrate pH 5.5, 1 mM DTT, 1 mM EDTA, 1 mM NaN3
|
Resolution 2.50 Å R-free 0.247 |
30 other PDB entries and 30 assemblies. Open the comparison page and filter oligomeric states
View Construct and Data Evidence
| UniProt name | THIL_ZOORA |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A; PDBConstruct 1–389; UniProt 4–391 Author chain B; PDBConstruct 1–389; UniProt 4–391 Author chain C; PDBConstruct 1–389; UniProt 4–391 Author chain D; PDBConstruct 1–389; UniProt 4–391 |