DIHYDROOROTATE DEHYDROGENASE A FROM LACTOCOCCUS LACTIS

Method: X-RAY DIFFRACTION D_max: 87.7 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1dor
deposition_date	1997-01-14
title	DIHYDROOROTATE DEHYDROGENASE A FROM LACTOCOCCUS LACTIS
keywords	OXIDOREDUCTASE, PYRIMIDINE NUCLEOTIDE BIOSYNTHESIS; OXIDOREDUCTASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	26.17 Å
rg_electron	25.21 Å
i0	73656900.00
molecular_weight	69313.0 kDa
excluded_volume	87623 Å³
envelope_volume	100180 Å³
shell_volume	32556 Å³
envelope_diameter	89.2 Å
shell_rg	33.22 Å
envelope_rg	25.48 Å
shape_rg	25.20 Å
total_rg	26.09 Å
total_atoms	4880
n_residues	622
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	87.7 Å
rg_real	26.15 Å
rg_real_error	0.72 Å
i0_real	7.3660e+07
i0_real_error	1.1560e+06
rg_reciprocal	26.16 Å
i0_reciprocal	73660000.0000
total_estimate	0.8749
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	30.2 Å
skewness	0.358
kurtosis	-0.315
angular_range	— – 0.3050 Å⁻¹
current_alpha	0.0000
highest_alpha	40140000.0000
n_real_points	62
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.808; Stabil: 0.996; Sysdev: 1.000; Positv: 1.000; Valcen: 0.991; Smooth: 0.966

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

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6. Citations (2)

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length_a	54.190 Å
length_b	109.230 Å
length_c	67.170 Å
angle_alpha	90.00 °
angle_beta	104.50 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	2.000 Å
resolution_low	25.000 Å
r_factor	0.1680
r_work	0.1680
r_free	0.2120

description	DIHYDROOROTATE DEHYDROGENASE A
formula_weight	34242.2 kDa
ec_number	1.3.3.1
src_method	nat
entity_count	2

type	polypeptide(L)
strand_id	A,B
atom_count	5233

DIHYDROOROTATE DEHYDROGENASE A FROM LACTOCOCCUS LACTIS

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Entity 2 non-polymer

Entity 3 water

6. Citations (2)

7. Files & Curves (10)

Files (7)

Curves (3)

description	FLAVIN MONONUCLEOTIDE
formula_weight	456.3 kDa
src_method	syn
entity_count	2

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	353

fit	/app/data/saxs_computation/do/1dor/1dor.fit
pddf	/app/data/pr_computation/do/1dor/1dor.pr.out
profile	/app/data/saxs_computation/do/1dor/1dor.dat