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1dpg

GLUCOSE 6-PHOSPHATE DEHYDROGENASE FROM LEUCONOSTOC MESENTEROIDES

Method: X-RAY DIFFRACTION D_max: 118.4 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1dpg
deposition_date	1995-12-04
title	GLUCOSE 6-PHOSPHATE DEHYDROGENASE FROM LEUCONOSTOC MESENTEROIDES
keywords	OXIDOREDUCTASE, NADP/NAD, GLUCOSE METABOLISM, OXIDOREDUCTASE (CHOH(D) - NAD(P)); OXIDOREDUCTASE (CHOH(D) - NAD(P))
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	36.71 Å
rg_electron	36.32 Å
i0	180060000.00
molecular_weight	108890.0 kDa
excluded_volume	136160 Å³
envelope_volume	172440 Å³
shell_volume	40913 Å³
envelope_diameter	126.4 Å
shell_rg	41.21 Å
envelope_rg	36.16 Å
shape_rg	36.33 Å
total_rg	36.60 Å
total_atoms	7695
n_residues	970
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	118.4 Å
rg_real	36.92 Å
rg_real_error	0.91 Å
i0_real	1.8010e+08
i0_real_error	2.9780e+06
rg_reciprocal	36.79 Å
i0_reciprocal	180000000.0000
total_estimate	0.8446
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	33.0 Å
skewness	0.426
kurtosis	-0.525
angular_range	— – 0.2150 Å⁻¹
current_alpha	0.0000
highest_alpha	34660000.0000
n_real_points	44
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.870; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.868; Smooth: 0.497

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	GLUCOSE 6-PHOSPHATE DEHYDROGENASE
formula_weight	54385.7 kDa
ec_number	1.1.1.49
mutation	S61C
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	8305

VSEIKTLVTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDCIKDFTDDQAQAEAFIEHFSYRAHDVTDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAPRFFGTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYLGKEMVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNHTMQIVGWLAMEKPESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVRAQYGAGDSADFKPYLEELDVPADSKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFKAGTFNFGSEQEAQEAVLSIIIDPKGAIELKLNAKSVEDAFNTRTIDLGWTVSDEDKKNTPEPYERMIHDTMNGDGSNFADWNGVSIAWKFVDAISAVYTADKAPLETYKSGSMGPEASDKLLAANGDAWVFKG

Source

organism	Leuconostoc mesenteroides
ncbi_taxonomy_id	1245
host_organism	Escherichia coli

Entity 2 non-polymer

description	PHOSPHATE ION
formula_weight	95.0 kDa
src_method	syn
entity_count	3

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	610

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6. Citations (2)

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length_a	105.710 Å
length_b	105.710 Å
length_c	224.310 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	12

space_group	P 32 2 1
int_tables_number	154
crystal_system	—

resolution	2.000 Å
resolution_low	27.000 Å
r_factor	0.2060
r_work	0.2060
r_free	0.2570

fit	/app/data/saxs_computation/dp/1dpg/1dpg.fit
pddf	/app/data/pr_computation/dp/1dpg/1dpg.pr.out
profile	/app/data/saxs_computation/dp/1dpg/1dpg.dat