STRUCTURE OF MODIFIED 3-ISOPROPYLMALATE DEHYDROGENASE AT THE C-TERMINUS, HD711

Method: X-RAY DIFFRACTION D_max: 88.4 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1dpz
deposition_date	1999-12-29
title	STRUCTURE OF MODIFIED 3-ISOPROPYLMALATE DEHYDROGENASE AT THE C-TERMINUS, HD711
keywords	DEHYDROGENASE, MINOR GROOVE, PAPERCLIP MOTION, OXIDOREDUCTASE; OXIDOREDUCTASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	27.65 Å
rg_electron	26.84 Å
i0	83170900.00
molecular_weight	73375.0 kDa
excluded_volume	92709 Å³
envelope_volume	110400 Å³
shell_volume	34342 Å³
envelope_diameter	90.7 Å
shell_rg	34.47 Å
envelope_rg	26.65 Å
shape_rg	26.85 Å
total_rg	27.60 Å
total_atoms	5179
n_residues	689
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	88.4 Å
rg_real	27.61 Å
rg_real_error	0.46 Å
i0_real	8.3170e+07
i0_real_error	1.1500e+06
rg_reciprocal	27.62 Å
i0_reciprocal	83170000.0000
total_estimate	0.8884
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	34.1 Å
skewness	0.346
kurtosis	-0.274
angular_range	— – 0.2850 Å⁻¹
current_alpha	0.0000
highest_alpha	30310000.0000
n_real_points	58
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.870; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.934

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (1)

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length_a	55.430 Å
length_b	87.570 Å
length_c	70.890 Å
angle_alpha	90.00 °
angle_beta	100.50 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	2.800 Å
resolution_low	6.800 Å
r_factor	0.1770
r_work	0.1770
r_free	0.2670

description	3-ISOPROPYLMALATE DEHYDROGENASE
formula_weight	37164.5 kDa
ec_number	1.1.1.85
src_method	man
entity_count	2

type	polypeptide(L)
strand_id	A,B
atom_count	5248

STRUCTURE OF MODIFIED 3-ISOPROPYLMALATE DEHYDROGENASE AT THE C-TERMINUS, HD711

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Thermus thermophilus
ncbi_taxonomy_id	300852
host_organism	Escherichia coli BL21(DE3)

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	69

fit	/app/data/saxs_computation/dp/1dpz/1dpz.fit
pddf	/app/data/pr_computation/dp/1dpz/1dpz.pr.out
profile	/app/data/saxs_computation/dp/1dpz/1dpz.dat