CRYSTAL STRUCTURE OF THE ISOCITRATE LYASE FROM ASPERGILLUS NIDULANS

Method: X-RAY DIFFRACTION D_max: 102.0 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1dqu
deposition_date	2000-01-05
title	CRYSTAL STRUCTURE OF THE ISOCITRATE LYASE FROM ASPERGILLUS NIDULANS
keywords	BETA BARREL, LYASE; LYASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	28.55 Å
rg_electron	27.85 Å
i0	54918700.00
molecular_weight	57718.0 kDa
excluded_volume	72170 Å³
envelope_volume	93840 Å³
shell_volume	29493 Å³
envelope_diameter	108.4 Å
shell_rg	33.67 Å
envelope_rg	28.62 Å
shape_rg	27.81 Å
total_rg	28.59 Å
total_atoms	4069
n_residues	513
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	102.0 Å
rg_real	28.67 Å
rg_real_error	0.95 Å
i0_real	5.4920e+07
i0_real_error	8.7330e+05
rg_reciprocal	28.63 Å
i0_reciprocal	54920000.0000
total_estimate	0.6511
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	32.8 Å
skewness	0.455
kurtosis	-0.131
angular_range	— – 0.2800 Å⁻¹
current_alpha	0.0000
highest_alpha	5155000.0000
n_real_points	57
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.760; Stabil: 1.000; Sysdev: 0.109; Positv: 1.000; Valcen: 0.887; Smooth: 0.965

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4. Crystallography & Experiment

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5. Entities & Polymer Info (1)

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6. Citations (2)

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length_a	91.930 Å
length_b	91.930 Å
length_c	152.770 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 42 21 2
int_tables_number	94
crystal_system	—

resolution	2.800 Å
resolution_low	10.000 Å
r_factor	0.2760
r_work	0.2730
r_free	0.3760

description	ISOCITRATE LYASE
formula_weight	60398.3 kDa
ec_number	4.1.3.1
src_method	man
entity_count	1

type	polypeptide(L)
strand_id	A
atom_count	4069

CRYSTAL STRUCTURE OF THE ISOCITRATE LYASE FROM ASPERGILLUS NIDULANS

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (1)

Entity 1 polymer

Polymer

Source

6. Citations (2)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Emericella nidulans
ncbi_taxonomy_id	162425
host_organism	Emericella nidulans

fit	/app/data/saxs_computation/dq/1dqu/1dqu.fit
pddf	/app/data/pr_computation/dq/1dqu/1dqu.pr.out
profile	/app/data/saxs_computation/dq/1dqu/1dqu.dat