;CRYSTAL STRUCTURE OF OROTIDINE 5'-PHOSPHATE DECARBOXYLASE ;

Method: X-RAY DIFFRACTION D_max: 101.8 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1dqw
deposition_date	2000-01-05
title	;CRYSTAL STRUCTURE OF OROTIDINE 5'-PHOSPHATE DECARBOXYLASE ;
keywords	;TIM barrel, orotidine 5'-phosphate, uridine 5'-phosphate, decarboxylase, LYASE ;; LYASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	33.95 Å
rg_electron	33.40 Å
i0	212219000.00
molecular_weight	117220.0 kDa
excluded_volume	147030 Å³
envelope_volume	183230 Å³
shell_volume	45023 Å³
envelope_diameter	105.6 Å
shell_rg	40.95 Å
envelope_rg	32.67 Å
shape_rg	33.39 Å
total_rg	33.97 Å
total_atoms	8236
n_residues	1068
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	101.8 Å
rg_real	33.80 Å
rg_real_error	0.51 Å
i0_real	2.1220e+08
i0_real_error	2.9400e+06
rg_reciprocal	33.89 Å
i0_reciprocal	212200000.0000
total_estimate	0.9100
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	36.8 Å
skewness	0.068
kurtosis	-0.755
angular_range	— – 0.2350 Å⁻¹
current_alpha	0.0000
highest_alpha	83250000.0000
n_real_points	48
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.967; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.926

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (1)

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length_a	90.060 Å
length_b	116.217 Å
length_c	116.979 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	16

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

resolution	2.100 Å
resolution_low	50.000 Å
r_factor	0.2180
r_work	0.2180
r_free	0.2550

description	;OROTIDINE 5'-PHOSPHATE DECARBOXYLASE ;
formula_weight	29347.6 kDa
ec_number	4.1.1.23
mutation	S2H, N267D
src_method	man
entity_count	4

type	polypeptide(L)
strand_id	A,B,C,D
atom_count	9110

;CRYSTAL STRUCTURE OF OROTIDINE 5'-PHOSPHATE DECARBOXYLASE ;

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Saccharomyces cerevisiae
common_name	;baker's yeast ;
ncbi_taxonomy_id	4932
host_organism	Escherichia coli

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	874

fit	/app/data/saxs_computation/dq/1dqw/1dqw.fit
pddf	/app/data/pr_computation/dq/1dqw/1dqw.pr.out
profile	/app/data/saxs_computation/dq/1dqw/1dqw.dat