← Back to search

1dvf

IDIOTOPIC ANTIBODY D1.3 FV FRAGMENT-ANTIIDIOTOPIC ANTIBODY E5.2 FV FRAGMENT COMPLEX

Method: X-RAY DIFFRACTION D_max: 84.2 Å Quality: GOOD

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	1dvf
deposition_date	1996-04-13
title	IDIOTOPIC ANTIBODY D1.3 FV FRAGMENT-ANTIIDIOTOPIC ANTIBODY E5.2 FV FRAGMENT COMPLEX
keywords	COMPLEX (IDIOTOPE-ANTIIDIOTOPE), IMMUNOGLOBULIN; COMPLEX (IDIOTOPE-ANTIIDIOTOPE)
method	X-RAY DIFFRACTION

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	24.55 Å
rg_electron	23.88 Å
i0	43644600.00
molecular_weight	49789.0 kDa
excluded_volume	61669 Å³
envelope_volume	71951 Å³
shell_volume	25719 Å³
envelope_diameter	87.4 Å
shell_rg	30.56 Å
envelope_rg	24.13 Å
shape_rg	23.81 Å
total_rg	24.84 Å
total_atoms	3497
n_residues	451
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	84.2 Å
rg_real	24.54 Å
rg_real_error	0.71 Å
i0_real	4.3640e+07
i0_real_error	6.6490e+05
rg_reciprocal	24.55 Å
i0_reciprocal	43640000.0000
total_estimate	0.8719
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	28.1 Å
skewness	0.369
kurtosis	-0.263
angular_range	— – 0.3250 Å⁻¹
current_alpha	0.0000
highest_alpha	11170000.0000
n_real_points	64
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.809; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.947; Smooth: 0.958

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (6)

Entity 1 polymer

description	FV D1.3
formula_weight	11858.2 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	3654

DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLKINSLQPEDFGSYYCQHFWSTPRTFGGGTKLEIKR

Source

organism	Mus musculus
common_name	house mouse
ncbi_taxonomy_id	10090
host_organism	Escherichia coli

Entity 2 polymer

description	FV D1.3
formula_weight	12857.3 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	B

QVQLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARERDYRLDYWGQGTTLTVSS

Source

organism	Mus musculus
common_name	house mouse
ncbi_taxonomy_id	10090
host_organism	Escherichia coli

Entity 3 polymer

description	FV E5.2
formula_weight	11771.0 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	C

DIQLTQSPSSLSASLGDRVTISCRASQDISNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISNLEQEDIATYFCQQGNTLPWTFGGGTKLEIK

Source

organism	Mus musculus
common_name	house mouse
ncbi_taxonomy_id	10090
host_organism	Escherichia coli

Entity 4 polymer

description	FV E5.2
formula_weight	13320.8 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	D

QVQLQQSGTELVKSGASVKLSCTASGFNIKDTHMNWVKQRPEQGLEWIGRIDPANGNIQYDPKFRGKATITADTSSNTAYLQLSSLTSEDTAVYYCATKVIYYQGRGAMDYWGQGTTLTVS

Source

organism	Mus musculus
common_name	house mouse
ncbi_taxonomy_id	10090
host_organism	Escherichia coli

Entity 5 non-polymer

description	ZINC ION
formula_weight	65.4 kDa
src_method	syn
entity_count	3

Entity 6 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	157

▶

6. Citations (3)

▶

length_a	152.800 Å
length_b	79.400 Å
length_c	51.500 Å
angle_alpha	90.00 °
angle_beta	100.20 °
angle_gamma	90.00 °
z_pdb	4

space_group	C 1 2 1
int_tables_number	5
crystal_system	—

resolution	1.900 Å
resolution_low	7.000 Å
r_factor	0.1940
r_work	0.1940
r_free	0.2490

fit	/app/data/saxs_computation/dv/1dvf/1dvf.fit
pddf	/app/data/pr_computation/dv/1dvf/1dvf.pr.out
profile	/app/data/saxs_computation/dv/1dvf/1dvf.dat

IDIOTOPIC ANTIBODY D1.3 FV FRAGMENT-ANTIIDIOTOPIC ANTIBODY E5.2 FV FRAGMENT COMPLEX

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

5. Entities & Polymer Info (6)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 polymer

Polymer

Source

Entity 4 polymer

Polymer

Source

Entity 5 non-polymer

Entity 6 water

6. Citations (3)

7. Files & Curves (10)

Files (7)

Curves (3)