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1dwl

The Ferredoxin-Cytochrome complex using heteronuclear NMR and docking simulation

D_max: 50.5 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1dwl
deposition_date	1999-12-08
title	The Ferredoxin-Cytochrome complex using heteronuclear NMR and docking simulation
keywords	ELECTRON TRANSFER, FERREDOXIN-CYTOCHROME COMPLEX, MODEL, HETERONUCLEAR NMR, DOCKING; ELECTRON TRANSFER

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	14.66 Å
rg_electron	14.48 Å
i0	38519300.00
molecular_weight	46574.0 kDa
excluded_volume	56698 Å³
envelope_volume	27198 Å³
shell_volume	14741 Å³
envelope_diameter	54.3 Å
shell_rg	21.51 Å
envelope_rg	15.82 Å
shape_rg	14.58 Å
total_rg	14.74 Å
total_atoms	3815
n_residues	414
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	50.5 Å
rg_real	14.66 Å
rg_real_error	0.39 Å
i0_real	3.8520e+07
i0_real_error	4.1210e+05
rg_reciprocal	14.66 Å
i0_reciprocal	38520000.0000
total_estimate	0.7753
solution_quality	GOOD a GOOD solution
n_peaks	3
r_peak_primary	17.3 Å
skewness	0.405
kurtosis	-0.165
angular_range	— – 0.5000 Å⁻¹
current_alpha	0.0000
highest_alpha	1432000.0000
n_real_points	80
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.710; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.948; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	FERREDOXIN I
formula_weight	6264.0 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	3815

TIVIDHEECIGCESCVELCPEVFAMIDGEEKAMVTAPDSTAECAQDAIDACPVEAISKE

Source

organism	DESULFOMICROBIUM NORVEGICUM
ncbi_taxonomy_id	52561
host_organism	ESCHERICHIA COLI

Entity 2 polymer

description	CYTOCHROME C553
formula_weight	8317.5 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	B

ADGAALYKSCIGCHGADGSKAAMGSAKPVKGQGAEELYKKMKGYADGSYGGERKAMMTNAVKKYSDEELKALADYMSKL

Entity 3 non-polymer

description	IRON/SULFUR CLUSTER
formula_weight	351.6 kDa
src_method	syn
entity_count	1

Entity 4 non-polymer

description	HEME C
formula_weight	618.5 kDa
src_method	syn
entity_count	1

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6. Citations (3)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	1

space_group	P 1
int_tables_number	1
crystal_system	—

fit	/app/data/saxs_computation/dw/1dwl/1dwl.fit
pddf	/app/data/pr_computation/dw/1dwl/1dwl.pr.out
profile	/app/data/saxs_computation/dw/1dwl/1dwl.dat

The Ferredoxin-Cytochrome complex using heteronuclear NMR and docking simulation

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Entity 3 non-polymer

Entity 4 non-polymer

6. Citations (3)

7. Files & Curves (10)

Files (7)

Curves (3)