← Back to search

1dzr

RmlC from Salmonella typhimurium

Method: X-RAY DIFFRACTION D_max: 76.7 Å Quality: GOOD

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	1dzr
deposition_date	2000-03-07
title	RmlC from Salmonella typhimurium
keywords	ISOMERASE, 3\, 5-HEXULOSE EPIMERASE; ISOMERASE
method	X-RAY DIFFRACTION

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	22.37 Å
rg_electron	21.61 Å
i0	29480700.00
molecular_weight	42158.0 kDa
excluded_volume	52969 Å³
envelope_volume	61844 Å³
shell_volume	24022 Å³
envelope_diameter	77.1 Å
shell_rg	28.41 Å
envelope_rg	21.88 Å
shape_rg	21.60 Å
total_rg	22.53 Å
total_atoms	2976
n_residues	366
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	76.7 Å
rg_real	22.38 Å
rg_real_error	0.46 Å
i0_real	2.9480e+07
i0_real_error	4.5500e+05
rg_reciprocal	22.38 Å
i0_reciprocal	29480000.0000
total_estimate	0.8613
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	25.6 Å
skewness	0.435
kurtosis	-0.133
angular_range	— – 0.3550 Å⁻¹
current_alpha	0.0000
highest_alpha	13500000.0000
n_real_points	67
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.739; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.991; Smooth: 0.985

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (4)

Entity 1 polymer

description	DTDP-4-DEHYDRORHAMNOSE 3\,5-EPIMERASE
formula_weight	20684.4 kDa
ec_number	5.1.3.13
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	3269

MMIVIKTAIPDVLILEPKVFGDERGFFFESYNQQTFEELIGRKVTFVQDNHSKSKKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFLYKATNYYSPSSEGSILWNDEAIGIEWPFSQLPELSAKDAAAPLLDQALLTE

Source

organism	SALMONELLA TYPHIMURIUM
ncbi_taxonomy_id	602
host_organism	ESCHERICHIA COLI

Entity 2 non-polymer

description	GLYCEROL
formula_weight	92.1 kDa
src_method	syn
entity_count	5

Entity 3 non-polymer

description	SULFATE ION
formula_weight	96.1 kDa
src_method	syn
entity_count	4

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	281

▶

6. Citations (1)

▶

length_a	71.550 Å
length_b	71.550 Å
length_c	184.450 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	12

space_group	P 31 2 1
int_tables_number	152
crystal_system	—

resolution	2.170 Å
resolution_low	20.000 Å
r_factor	0.2260
r_work	0.2260
r_free	0.2600

fit	/app/data/saxs_computation/dz/1dzr/1dzr.fit
pddf	/app/data/pr_computation/dz/1dzr/1dzr.pr.out
profile	/app/data/saxs_computation/dz/1dzr/1dzr.dat

RmlC from Salmonella typhimurium

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction