← Back to search

1e57

PHYSALIS MOTTLE VIRUS: EMPTY CAPSID

Method: X-RAY DIFFRACTION D_max: 92.9 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	1e57
deposition_date	2000-07-18
title	PHYSALIS MOTTLE VIRUS: EMPTY CAPSID
keywords	VIRUS, COAT PROTEIN (VIRAL), ICOSAHEDRAL VIRUS; VIRUS
method	X-RAY DIFFRACTION

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	29.50 Å
rg_electron	29.08 Å
i0	43630700.00
molecular_weight	53078.0 kDa
excluded_volume	67086 Å³
envelope_volume	90883 Å³
shell_volume	26974 Å³
envelope_diameter	97.2 Å
shell_rg	34.94 Å
envelope_rg	28.96 Å
shape_rg	29.08 Å
total_rg	29.70 Å
total_atoms	3742
n_residues	522
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	92.9 Å
rg_real	29.51 Å
rg_real_error	0.78 Å
i0_real	4.3630e+07
i0_real_error	7.4190e+05
rg_reciprocal	29.51 Å
i0_reciprocal	43630000.0000
total_estimate	0.9025
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	1
r_peak_primary	27.5 Å
skewness	0.224
kurtosis	-0.723
angular_range	— – 0.2700 Å⁻¹
current_alpha	0.0000
highest_alpha	10140000.0000
n_real_points	55
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.957; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.950; Smooth: 0.908

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (1)

▶

6. Citations (9)

Structural Studies on the Empty Capsids of Physalis Mottle Virus

J.Mol.Biol. (2001)

PMID: 11286554 · DOI: 10.1006/JMBI.2001.4533 PRIMARY

Three Dimensional Structure of Physalis Movirus: Implications for the Viral Assembly

J.Mol.Biol. (1999)

PMID: 10369772 · DOI: 10.1006/JMBI.1999.2787

Identification of a Discrete Intermediate in the Assembly/Disassembly of Physalis Mottle Tymovirus Through Mutational Analysis

J.Mol.Biol. (1999)

PMID: 10369771 · DOI: 10.1006/JMBI.1999.2786

;Assembly of Physalis Mottle Virus Capsid Protein in Escherichia Coli and the Role of Amino and Carboxy Termini in the Formation of the Icosahedral Particles ;

J.Mol.Biol. (1997)

PMID: 9325111 · DOI: 10.1006/JMBI.1997.1258

Architecture of Physalis Mottle Tymovirus as Probed by Monoclonal Antibodies and Cross-Linking Studies

Virology (1993)

PMID: 8460497 · DOI: 10.1006/VIRO.1993.1205

Structure of Belladonna Mottle Virus: Cross-Rotation Function Studies with Southern Bean Mosaic Virus

Acta Crystallogr.,Sect.B (1990)

Primary Structure of Belladonna Mottle Virus Coat Protein

J.Biol.Chem. (1989)

PMID: 2467911

Stability of Belladonna Mottle Virus Particles: The Role of Polyamines and Calcium

J.Gen.Virol. (1987)

Symmetry of Belladonna Mottle Virus: Rotation Function Studies

Acta Crystallogr.,Sect.B (1987)

▶

length_a	289.640 Å
length_b	287.722 Å
length_c	295.226 Å
angle_alpha	63.59 °
angle_beta	61.39 °
angle_gamma	62.94 °
z_pdb	3

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.200 Å
resolution_low	10.000 Å
r_factor	0.2790
r_work	0.2790
r_free	0.2960

description	PHYSALIS MOTTLE VIRUS
formula_weight	19989.9 kDa
src_method	man
entity_count	3

type	polypeptide(L)
strand_id	A,B,C
atom_count	3742

PHYSALIS MOTTLE VIRUS: EMPTY CAPSID

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (1)

Entity 1 polymer

Polymer

Source

6. Citations (9)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	PHYSALIS MOTTLE VIRUS
ncbi_taxonomy_id	72539
host_organism	ESCHERICHIA COLI

fit	/app/data/saxs_computation/e5/1e57/1e57.fit
pddf	/app/data/pr_computation/e5/1e57/1e57.pr.out
profile	/app/data/saxs_computation/e5/1e57/1e57.dat