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1e7p

QUINOL:FUMARATE REDUCTASE FROM WOLINELLA SUCCINOGENES

Method: X-RAY DIFFRACTION D_max: 232.9 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1e7p
deposition_date	2000-09-01
title	QUINOL:FUMARATE REDUCTASE FROM WOLINELLA SUCCINOGENES
keywords	;OXIDOREDUCTASE, SUCCINATE DEHYDROGENASE, RESPIRATORY CHAIN, CITRIC ACID CYCLE, FLAVOPROTEIN, IRON- SULPHUR PROTEIN IRON- SULPHUR PROTEIN, DIHAEM CYTOCHROME B ;; OXIDOREDUCTASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	67.93 Å
rg_electron	68.32 Å
i0	3903760000.00
molecular_weight	530510.0 kDa
excluded_volume	663190 Å³
envelope_volume	943600 Å³
shell_volume	111630 Å³
envelope_diameter	241.3 Å
shell_rg	74.42 Å
envelope_rg	66.01 Å
shape_rg	68.39 Å
total_rg	68.16 Å
total_atoms	37072
n_residues	4592
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	232.9 Å
rg_real	67.99 Å
rg_real_error	2.77 Å
i0_real	3.9040e+09
i0_real_error	8.3450e+07
rg_reciprocal	67.58 Å
i0_reciprocal	3900000000.0000
total_estimate	0.8528
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	91.1 Å
skewness	0.238
kurtosis	-0.591
angular_range	— – 0.1150 Å⁻¹
current_alpha	0.0000
highest_alpha	132100000.0000
n_real_points	24
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.844; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.938; Smooth: 0.612

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4. Crystallography & Experiment

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5. Entities & Polymer Info (11)

Entity 1 polymer

description	Fumarate reductase flavoprotein subunit
formula_weight	72825.1 kDa
ec_number	1.3.5.4
src_method	man
entity_count	4

Polymer

type	polypeptide(L)
strand_id	A,D,G,J
atom_count	37072

MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLHFMDTVKGSDWGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIHSRDFGGTKKWRTCYTADATGHTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIALETGIAQLGNMEAVQFHPTPLFPSGILLTEGCRGDGGILRDVDGHRFMPDYEPEKKELASRDVVSRRMIEHIRKGKGVQSPYGQHLWLDISILGRKHIETNLRDVQEICEYFAGIDPAEKWAPVLPMQHYSMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCANTQVDLETKTLEKFVKGQEAYMKSLVESKGTEDVFKIKNRMKDVMDDNVGIFRDGPHLEKAVKELEELYKKSKNVGIKNKRLHANPELEEAYRVPMMLKVALCVAKGALDRTESRGAHNREDYPKRDDINWLNRTLASWPNPEQTLPTLEYEALDVNEMEIAPGYRGYGAKGNYIENPLSVKRQEEIDKIQSELEAAGKDRHAIQEALMPYELPAKYKARNERLGDK

Source

organism	Wolinella succinogenes
common_name	Vibrio succinogenes
ncbi_taxonomy_id	844
host_organism	Wolinella succinogenes

Entity 2 polymer

description	Fumarate reductase iron-sulfur subunit
formula_weight	27197.5 kDa
ec_number	1.3.5.1
src_method	man
entity_count	4

Polymer

type	polypeptide(L)
strand_id	B,E,H,K

MGRMLTIRVFKYDPQSAVSKPHFQEYKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMINGRPSLACRTLTKDFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWIHAQKEHDISKLEERIEPEVAQEVFELDRCIECGCCIAACGTKIMREDFVGAAGLNRVVRFMIDPHDERTDEDYYELIGDDDGVFGCMTLLACHDVCPKNLPLQSKIAYLRRKMVSVN

Source

organism	Wolinella succinogenes
common_name	Vibrio succinogenes
ncbi_taxonomy_id	844
host_organism	Wolinella succinogenes

Entity 3 polymer

description	Fumarate reductase cytochrome b subunit
formula_weight	29758.1 kDa
mutation	E66Q
src_method	man
entity_count	4

Polymer

type	polypeptide(L)
strand_id	C,F,I,L

MTNESILESYSGVTPERKKSRMPAKLDWWQSATGLFLGLFMIGHMFFVSTILLGDNVMLWVTKKFQLDFIFEGGKPIVVSFLAAFVFAVFIAHAFLAMRKFPINYRQYLTFKTHKDLMRHGDTTLWWIQAMTGFAMFFLGSVHLYIMMTQPQTIGPVSSSFRMVSEWMWPLYLVLLFAVELHGSVGLYRLAVKWGWFDGETPDKTRANLKKLKTLMSAFLIVLGLLTFGAYVKKGLEQTDPNIDYKYFDYKRTHHR

Source

organism	Wolinella succinogenes
common_name	Vibrio succinogenes
ncbi_taxonomy_id	844
host_organism	Wolinella succinogenes

Entity 4 non-polymer

description	FLAVIN-ADENINE DINUCLEOTIDE
formula_weight	785.5 kDa
src_method	syn
entity_count	4

Entity 5 non-polymer

description	MALONIC ACID
formula_weight	104.1 kDa
src_method	syn
entity_count	4

Entity 6 non-polymer

description	SODIUM ION
formula_weight	23.0 kDa
src_method	syn
entity_count	4

Entity 7 non-polymer

description	FE2/S2 (INORGANIC) CLUSTER
formula_weight	175.8 kDa
src_method	syn
entity_count	4

Entity 8 non-polymer

description	FE3-S4 CLUSTER
formula_weight	295.8 kDa
src_method	syn
entity_count	4

Entity 9 non-polymer

description	IRON/SULFUR CLUSTER
formula_weight	351.6 kDa
src_method	syn
entity_count	4

Entity 10 non-polymer

description	PROTOPORPHYRIN IX CONTAINING FE
formula_weight	616.5 kDa
src_method	syn
entity_count	8

Entity 11 non-polymer

description	DODECYL-BETA-D-MALTOSIDE
formula_weight	510.6 kDa
src_method	syn
entity_count	4

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6. Citations (3)

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length_a	81.074 Å
length_b	290.240 Å
length_c	153.614 Å
angle_alpha	90.00 °
angle_beta	95.73 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	3.100 Å
resolution_low	30.000 Å
r_factor	0.2830
r_work	0.2830
r_free	0.2910

fit	/app/data/saxs_computation/e7/1e7p/1e7p.fit
pddf	/app/data/pr_computation/e7/1e7p/1e7p.pr.out
profile	/app/data/saxs_computation/e7/1e7p/1e7p.dat

QUINOL:FUMARATE REDUCTASE FROM WOLINELLA SUCCINOGENES

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (11)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 polymer

Polymer

Source

Entity 4 non-polymer

Entity 5 non-polymer

Entity 6 non-polymer

Entity 7 non-polymer

Entity 8 non-polymer

Entity 9 non-polymer

Entity 10 non-polymer

Entity 11 non-polymer

6. Citations (3)

7. Files & Curves (10)

Files (7)

Curves (3)