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1efp

ELECTRON TRANSFER FLAVOPROTEIN (ETF) FROM PARACOCCUS DENITRIFICANS

Method: X-RAY DIFFRACTION D_max: 127.2 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1efp
deposition_date	1998-12-18
title	ELECTRON TRANSFER FLAVOPROTEIN (ETF) FROM PARACOCCUS DENITRIFICANS
keywords	ELECTRON TRANSPORT, FLAVOPROTEIN, GLUTARIC ACIDEMIA TYPE II; ELECTRON TRANSPORT
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	38.40 Å
rg_electron	38.79 Å
i0	204897000.00
molecular_weight	116680.0 kDa
excluded_volume	146570 Å³
envelope_volume	189530 Å³
shell_volume	42338 Å³
envelope_diameter	136.7 Å
shell_rg	42.89 Å
envelope_rg	38.02 Å
shape_rg	38.75 Å
total_rg	39.17 Å
total_atoms	8190
n_residues	1106
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	127.2 Å
rg_real	38.79 Å
rg_real_error	1.12 Å
i0_real	2.0490e+08
i0_real_error	3.6020e+06
rg_reciprocal	38.56 Å
i0_reciprocal	204800000.0000
total_estimate	0.8081
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	34.1 Å
skewness	0.488
kurtosis	-0.519
angular_range	— – 0.2050 Å⁻¹
current_alpha	0.0000
highest_alpha	36930000.0000
n_real_points	42
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.743; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.815; Smooth: 0.458

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4. Crystallography & Experiment

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5. Entities & Polymer Info (5)

Entity 1 polymer

description	PROTEIN (ELECTRON TRANSFER FLAVOPROTEIN)
formula_weight	31192.3 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,C
atom_count	8291

AVLLLGEVTNGALNRDATAKAVAAVKALGDVTVLCAGASAKAAAEEAAKIAGVAKVLVAEDALYGHRLAEPTAALIVGLAGDYSHIAAPATTDAKNVMPRVAALLDVMVLSDVSAILDADTFERPIYAGNAIQVVKSKDAKKVFTIRTASFDAAGEGGTAPVTETAAAADPGLSSWVADEVAESDRPELTSARRVVSGGRGLGSKESFAIIEELADKLGAAVGASRAAVDSGYAPNDWQVGQTGKVVAPELYVAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQIADYGLVGDLFSVVPELTGKL

Source

organism	Paracoccus denitrificans
ncbi_taxonomy_id	266
host_organism	Escherichia coli

Entity 2 polymer

description	PROTEIN (ELECTRON TRANSFER FLAVOPROTEIN)
formula_weight	26707.0 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	B,D

MKVLVPVKRLIDYNVKARVKSDGSGVDLANVKMSMNPFDEIAVEEAIRLKEKGQAEEIIAVSIGVKQAAETLRTALAMGADRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGWAQATFASKVEIEGAKAKVTREVDGGLQTIAVSLPAVVTADLRLNEPRYASLPNIMKAKKKPLDEKTAADYGVDVAPRLEVVSVREPEGRKAGIKVGSVDELVGKLKEAGVI

Source

organism	Paracoccus denitrificans
ncbi_taxonomy_id	266
host_organism	Escherichia coli

Entity 3 non-polymer

description	FLAVIN-ADENINE DINUCLEOTIDE
formula_weight	785.5 kDa
src_method	syn
entity_count	2

Entity 4 non-polymer

description	ADENOSINE MONOPHOSPHATE
formula_weight	347.2 kDa
src_method	syn
entity_count	2

Entity 5 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	101

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6. Citations (3)

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length_a	70.430 Å
length_b	80.530 Å
length_c	183.970 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

resolution	2.600 Å
resolution_low	12.000 Å
r_factor	0.1930
r_work	0.1930
r_free	0.2860

fit	/app/data/saxs_computation/ef/1efp/1efp.fit
pddf	/app/data/pr_computation/ef/1efp/1efp.pr.out
profile	/app/data/saxs_computation/ef/1efp/1efp.dat

ELECTRON TRANSFER FLAVOPROTEIN (ETF) FROM PARACOCCUS DENITRIFICANS

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (5)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 non-polymer

Entity 4 non-polymer

Entity 5 water

6. Citations (3)

7. Files & Curves (10)

Files (7)

Curves (3)