Star-related lipid transport domain of MLN64

Method: X-RAY DIFFRACTION D_max: 59.8 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1em2
deposition_date	2000-03-14
title	Star-related lipid transport domain of MLN64
keywords	BETA BARREL, LIPID BINDING PROTEIN; LIPID BINDING PROTEIN
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	18.05 Å
rg_electron	16.87 Å
i0	11196800.00
molecular_weight	24616.0 kDa
excluded_volume	30715 Å³
envelope_volume	35793 Å³
shell_volume	17596 Å³
envelope_diameter	59.0 Å
shell_rg	23.21 Å
envelope_rg	17.18 Å
shape_rg	16.90 Å
total_rg	17.81 Å
total_atoms	1726
n_residues	211
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	59.8 Å
rg_real	17.92 Å
rg_real_error	0.39 Å
i0_real	1.1200e+07
i0_real_error	1.3900e+05
rg_reciprocal	17.94 Å
i0_reciprocal	11200000.0000
total_estimate	0.7894
solution_quality	GOOD a GOOD solution
n_peaks	3
r_peak_primary	24.2 Å
skewness	0.164
kurtosis	-0.325
angular_range	— – 0.4400 Å⁻¹
current_alpha	0.0000
highest_alpha	3598000.0000
n_real_points	75
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.761; Stabil: 0.993; Sysdev: 1.000; Positv: 1.000; Valcen: 0.994; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

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6. Citations (1)

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length_a	83.417 Å
length_b	83.417 Å
length_c	81.946 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	6

space_group	P 31 2 1
int_tables_number	152
crystal_system	—

resolution	2.200 Å
resolution_low	25.000 Å
r_factor	—
r_work	0.2070
r_free	0.2640

description	MLN64 PROTEIN
formula_weight	26113.1 kDa
mutation	F388M
src_method	man
entity_count	1

type	polypeptide(L)
strand_id	A
atom_count	1891

Star-related lipid transport domain of MLN64

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Source

Entity 2 non-polymer

Entity 3 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Escherichia coli

description	D(-)-TARTARIC ACID
formula_weight	150.1 kDa
src_method	syn
entity_count	1

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	165

fit	/app/data/saxs_computation/em/1em2/1em2.fit
pddf	/app/data/pr_computation/em/1em2/1em2.pr.out
profile	/app/data/saxs_computation/em/1em2/1em2.dat