SAXSdb — 1eth

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1. Structure Basics

entry_id	1eth
deposition_date	1995-09-13
title	TRIACYLGLYCEROL LIPASE/COLIPASE COMPLEX
keywords	COMPLEX (HYDROLASE-COFACTOR), LIPID DEGRADATION, COMPLEX (HYDROLASE-COFACTOR) complex; COMPLEX (HYDROLASE/COFACTOR)
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	36.19 Å
rg_electron	36.35 Å
i0	237201000.00
molecular_weight	121910.0 kDa
excluded_volume	151420 Å³
envelope_volume	189100 Å³
shell_volume	44473 Å³
envelope_diameter	142.0 Å
shell_rg	40.59 Å
envelope_rg	36.76 Å
shape_rg	36.29 Å
total_rg	36.80 Å
total_atoms	10690
n_residues	1070
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	124.1 Å
rg_real	36.36 Å
rg_real_error	1.14 Å
i0_real	2.3720e+08
i0_real_error	4.0950e+06
rg_reciprocal	36.26 Å
i0_reciprocal	237200000.0000
total_estimate	0.8583
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	36.7 Å
skewness	0.482
kurtosis	-0.134
angular_range	— – 0.2200 Å⁻¹
current_alpha	0.0000
highest_alpha	28650000.0000
n_real_points	45
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.827; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.918; Smooth: 0.753

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4. Crystallography & Experiment

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5. Entities & Polymer Info (7)

Entity 1 polymer

description	TRIACYLGLYCEROL ACYL-HYDROLASE
formula_weight	49908.9 kDa
ec_number	3.1.1.3
src_method	nat
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,C
atom_count	11761

SEVCFPRLGCFSDDAPWAGIVQRPLKILPWSPKDVDTRFLLYTNQNQNNYQELVADPSTITNSNFRMDRKTRFIIHGFIDKGEEDWLSNICKNLFKVESVNCICVDWKGGSRTGYTQASQNIRIVGAEVAYFVEVLKSSLGYSPSNVHVIGHSLGSHAAGEAGRRTNGTIERITGLDPAEPCFQGTPELVRLDPSDAKFVDVIHTDAAPIIPNLGFGMSQTVGHLDFFPNGGKQMPGCQKNILSQIVDIDGIWEGTRDFVACNHLRSYKYYADSILNPDGFAGFPCDSYNVFTANKCFPCPSEGCPQMGHYADRFPGKTNGVSQVFYLNTGDASNFARWRYKVSVTLSGKKVTGHILVSLFGNEGNSRQYEIYKGTLQPDNTHSDEFDSDVEVGDLQKVKFIWYNVINPTLPRVGASKITVERNDGKVYDFCSQETVREEVLLTLNPC

Entity 2 polymer

description	COLIPASE
formula_weight	10319.7 kDa
src_method	nat
entity_count	2

Polymer

type	polypeptide(L)
strand_id	B,D

VPDPRGIIINLDEGELCLNSAQCKSNCCQHDTILSLSRCALKARENSECSAFTLYGVYYKCPCERGLTCEGDKSLVGSITNTNFGICHNVGRSDS

Entity 3 branched

description	;beta-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ;
formula_weight	910.8 kDa
src_method	man
entity_count	2

Entity 4 non-polymer

description	CALCIUM ION
formula_weight	40.1 kDa
src_method	syn
entity_count	2

Entity 5 non-polymer

description	(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
formula_weight	306.4 kDa
src_method	syn
entity_count	4

Entity 6 non-polymer

description	BETA-MERCAPTOETHANOL
formula_weight	78.1 kDa
src_method	syn
entity_count	2

Entity 7 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	357

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6. Citations (3)

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length_a	289.100 Å
length_b	289.100 Å
length_c	289.100 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	96

space_group	F 2 3
int_tables_number	196
crystal_system	—

resolution	2.800 Å
resolution_low	6.000 Å
r_factor	0.2100
r_work	0.2100
r_free	0.2900

fit	/app/data/saxs_computation/et/1eth/1eth.fit
pddf	/app/data/pr_computation/et/1eth/1eth.pr.out
profile	/app/data/saxs_computation/et/1eth/1eth.dat

TRIACYLGLYCEROL LIPASE/COLIPASE COMPLEX

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

5. Entities & Polymer Info (7)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 branched

Entity 4 non-polymer

Entity 5 non-polymer

Entity 6 non-polymer

Entity 7 water

6. Citations (3)

7. Files & Curves (10)

Files (7)

Curves (3)