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1eys

CRYSTAL STRUCTURE OF PHOTOSYNTHETIC REACTION CENTER FROM A THERMOPHILIC BACTERIUM, THERMOCHROMATIUM TEPIDUM

Method: X-RAY DIFFRACTION D_max: 127.2 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1eys
deposition_date	2000-05-08
title	CRYSTAL STRUCTURE OF PHOTOSYNTHETIC REACTION CENTER FROM A THERMOPHILIC BACTERIUM, THERMOCHROMATIUM TEPIDUM
keywords	MEMBRANE PROTEIN COMPLEX, ELECTRON TRANSPORT; ELECTRON TRANSPORT
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	36.64 Å
rg_electron	35.53 Å
i0	238642000.00
molecular_weight	139120.0 kDa
excluded_volume	179490 Å³
envelope_volume	209690 Å³
shell_volume	49910 Å³
envelope_diameter	131.1 Å
shell_rg	41.20 Å
envelope_rg	35.79 Å
shape_rg	35.48 Å
total_rg	36.13 Å
total_atoms	9856
n_residues	1146
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	127.2 Å
rg_real	36.88 Å
rg_real_error	1.31 Å
i0_real	2.3860e+08
i0_real_error	3.8670e+06
rg_reciprocal	36.73 Å
i0_reciprocal	238600000.0000
total_estimate	0.8428
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	35.5 Å
skewness	0.522
kurtosis	-0.186
angular_range	— – 0.2150 Å⁻¹
current_alpha	0.0000
highest_alpha	43130000.0000
n_real_points	44
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.779; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.843; Smooth: 0.775

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4. Crystallography & Experiment

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5. Entities & Polymer Info (14)

Entity 1 polymer

description	PHOTOSYNTHETIC REACTION CENTER
formula_weight	40880.7 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	C
atom_count	10044

CEGPPPGTEQIGYRGVGMENYYVKRQRALSIQANQPVESLPAADSTGPKASEVYQSVQVLKDLSVGEFTRTMVAVTTWVSPKEGCNYCHVPGNWASDDIYTKVVSRRMFELVRAANSDWKAHVAETGVTCYTCHRGNPVPKYAWVTDPGPKYPSGLKPTGQNYGSKTVAYASLPFDPLTPFLDQANEIRITGNAALAGSNPASLKQAEWTFGLMMNISDSLGVGCTSCHNTRAFNDWTQSTPKRTTAWYAIRHVRDINQNYIWPLNDVLPASRKGPYGDPLRVSCMTCHQAVNKPLYGAQMAKDYPGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVEPAPVEEVAPAPAAQRL

Entity 2 polymer

description	PHOTOSYNTHETIC REACTION CENTER
formula_weight	31417.6 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	L

AMLSFEKKYRVRGGTLIGGDLFDFWVGPFYVGFFGVVGFCFTLLGVLLIVWGATIGPTGPTSDLQTYNLWRISIAPPDLSYGLRMAPLTEGGLWQIITICAAGAFISWALREVEICRKLGIGFHVPFAFSFAIGAYLVLVFVRPLLMGAWGHGFPYGILSHLDWVSNVGYQFLHFHYNPAHMLAISFFFTNCLALSMHGSLILSVTNPQRGEPVKTSEHENTFFRDIVGYSIGALAIHRLGLFLALSAAFWSAVCILISGPFWTRGWPEWWNWWLELPLW

Entity 3 polymer

description	PHOTOSYNTHETIC REACTION CENTER
formula_weight	36328.3 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	M

PEYQNIFTAVQVRAPAYPGVPLPKGNLPRIGRPIFSYWLGKIGDAQIGPIYLGLTGTLSIFFGLVAISIIGFNMLASVHWDVFQFLKHFFWLGLEPPPPQYGLRIPPLSEGGWWLIAGLFLTLSILLWWVRTYKRAEALGMSQHLSWAFAAAIFFYLVLGFIRPVMMGSWAKAVPFGIFPHLDWTAAFSIRYGNLYYNPFHMLSIAFLYGSALLFAMHGATILSVSRFGGDREIDQITHRGTAAEGAALFWRWTMGFNATMESIHRWAWWCAVLTVITAGIGILLSGTVVDNWYLWAVKHGMAPAYPEVVTAVNPYETAAEVMQ

Entity 4 polymer

description	PHOTOSYNTHETIC REACTION CENTER
formula_weight	28286.4 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	H

MPAGITHYIDAAQITIWAFWLFFFGLIIYLRREDKREGYPLDSNRTERSGGRYKVVGFPDLPDPKTFVLPHNGGTVVAPRVEAPVAVNATPFSPAPGSPLVPNGDPMLSGFGPAASPDRPKHCDLTFEGLPKIVPMRVAKEFSIAEGDPDPRGMTVVGLDGEVAGTVSDVWVDRSEPQIRYLEVEVAANKKKVLLPIGFSRFDKKARKVKVDAIKAAHFANVPTLSNPDQVTLYEEDKVCAYYAGGKLYATAERAGPLL

Entity 5 non-polymer

description	PROTOPORPHYRIN IX CONTAINING FE
formula_weight	616.5 kDa
src_method	syn
entity_count	4

Entity 6 non-polymer

description	2-O-octyl-beta-D-glucopyranose
formula_weight	292.4 kDa
src_method	man
entity_count	6

Entity 7 non-polymer

description	BACTERIOCHLOROPHYLL A
formula_weight	911.5 kDa
src_method	syn
entity_count	4

Entity 8 non-polymer

description	BACTERIOPHEOPHYTIN A
formula_weight	889.2 kDa
src_method	syn
entity_count	2

Entity 9 non-polymer

description	LAURYL DIMETHYLAMINE-N-OXIDE
formula_weight	229.4 kDa
src_method	syn
entity_count	1

Entity 10 non-polymer

description	FE (III) ION
formula_weight	55.8 kDa
src_method	syn
entity_count	1

Entity 11 non-polymer

description	MENAQUINONE 8
formula_weight	717.1 kDa
src_method	syn
entity_count	1

Entity 12 non-polymer

description	SPIRILLOXANTHIN
formula_weight	596.9 kDa
src_method	syn
entity_count	1

Entity 13 non-polymer

description	DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE
formula_weight	692.0 kDa
src_method	syn
entity_count	1

Entity 14 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	188

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6. Citations (2)

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length_a	133.299 Å
length_b	196.596 Å
length_c	84.163 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

resolution	2.200 Å
resolution_low	10.000 Å
r_factor	0.2340
r_work	0.2310
r_free	0.2870

fit	/app/data/saxs_computation/ey/1eys/1eys.fit
pddf	/app/data/pr_computation/ey/1eys/1eys.pr.out
profile	/app/data/saxs_computation/ey/1eys/1eys.dat

CRYSTAL STRUCTURE OF PHOTOSYNTHETIC REACTION CENTER FROM A THERMOPHILIC BACTERIUM, THERMOCHROMATIUM TEPIDUM

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (14)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

Entity 4 polymer

Polymer

Entity 5 non-polymer

Entity 6 non-polymer

Entity 7 non-polymer

Entity 8 non-polymer

Entity 9 non-polymer

Entity 10 non-polymer

Entity 11 non-polymer

Entity 12 non-polymer

Entity 13 non-polymer

Entity 14 water

6. Citations (2)

7. Files & Curves (10)

Files (7)

Curves (3)