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1f2d

1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE

Method: X-RAY DIFFRACTION D_max: 112.2 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1f2d
deposition_date	2000-05-24
title	1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE
keywords	1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE, CARBON-CARBON LYASE, OPEN TWISTED ALPHA/BETA, LYASE; LYASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	34.78 Å
rg_electron	34.07 Å
i0	340104000.00
molecular_weight	149470.0 kDa
excluded_volume	187170 Å³
envelope_volume	222960 Å³
shell_volume	53253 Å³
envelope_diameter	120.8 Å
shell_rg	41.87 Å
envelope_rg	33.81 Å
shape_rg	34.08 Å
total_rg	34.55 Å
total_atoms	10508
n_residues	1364
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	112.2 Å
rg_real	34.73 Å
rg_real_error	0.60 Å
i0_real	3.4010e+08
i0_real_error	4.8230e+06
rg_reciprocal	34.76 Å
i0_reciprocal	340100000.0000
total_estimate	0.8923
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	41.5 Å
skewness	0.309
kurtosis	-0.419
angular_range	— – 0.2300 Å⁻¹
current_alpha	0.0001
highest_alpha	140500000.0000
n_real_points	47
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.907; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.876

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE
formula_weight	37087.1 kDa
ec_number	4.1.99.4
src_method	man
entity_count	4

Polymer

type	polypeptide(L)
strand_id	A,B,C,D
atom_count	11447

AGVAKFAKYPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQTLRIANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLTDPVYEGKSMQGLIALIKEDYFKPGANVLYVHLGGAPALSAYSSFFPTKTA

Source

organism	Williopsis saturnus
ncbi_taxonomy_id	4906
host_organism	Escherichia coli

Entity 2 non-polymer

description	SULFATE ION
formula_weight	96.1 kDa
src_method	syn
entity_count	4

Entity 3 non-polymer

description	PYRIDOXAL-5'-PHOSPHATE
formula_weight	247.1 kDa
src_method	syn
entity_count	4

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	939

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6. Citations (1)

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length_a	66.380 Å
length_b	269.370 Å
length_c	186.620 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	32

space_group	C 2 2 21
int_tables_number	20
crystal_system	—

resolution	2.000 Å
resolution_low	15.000 Å
r_factor	0.2210
r_work	0.2210
r_free	0.2680

fit	/app/data/saxs_computation/f2/1f2d/1f2d.fit
pddf	/app/data/pr_computation/f2/1f2d/1f2d.pr.out
profile	/app/data/saxs_computation/f2/1f2d/1f2d.dat

1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction