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1f2u

Crystal Structure of RAD50 ABC-ATPase

Method: X-RAY DIFFRACTION D_max: 92.5 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1f2u
deposition_date	2000-05-29
title	Crystal Structure of RAD50 ABC-ATPase
keywords	DNA double-strand break repair, ABC-ATPase, REPLICATION; REPLICATION
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	26.87 Å
rg_electron	25.99 Å
i0	70199700.00
molecular_weight	67561.0 kDa
excluded_volume	85502 Å³
envelope_volume	103310 Å³
shell_volume	32714 Å³
envelope_diameter	100.0 Å
shell_rg	33.68 Å
envelope_rg	26.11 Å
shape_rg	26.00 Å
total_rg	26.75 Å
total_atoms	4755
n_residues	584
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	92.5 Å
rg_real	26.84 Å
rg_real_error	0.85 Å
i0_real	7.0200e+07
i0_real_error	1.0720e+06
rg_reciprocal	26.85 Å
i0_reciprocal	70200000.0000
total_estimate	0.7914
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	81.5 Å
skewness	0.355
kurtosis	-0.211
angular_range	— – 0.2950 Å⁻¹
current_alpha	0.0000
highest_alpha	20270000.0000
n_real_points	60
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.774; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.962; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (5)

Entity 1 polymer

description	RAD50 ABC-ATPASE
formula_weight	17110.8 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,C
atom_count	5128

MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILES

Source

organism	Pyrococcus furiosus
ncbi_taxonomy_id	2261
host_organism	Escherichia coli

Entity 2 polymer

description	RAD50 ABC-ATPASE
formula_weight	16787.4 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	B,D

KYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENGSSKVEVVS

Source

organism	Pyrococcus furiosus
ncbi_taxonomy_id	2261
host_organism	Escherichia coli

Entity 3 non-polymer

description	MAGNESIUM ION
formula_weight	24.3 kDa
src_method	syn
entity_count	2

Entity 4 non-polymer

description	ADENOSINE-5'-TRIPHOSPHATE
formula_weight	507.2 kDa
src_method	syn
entity_count	2

Entity 5 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	373

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6. Citations (1)

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length_a	79.900 Å
length_b	82.600 Å
length_c	106.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

resolution	1.600 Å
resolution_low	20.000 Å
r_factor	0.2380
r_work	0.2380
r_free	0.2820

fit	/app/data/saxs_computation/f2/1f2u/1f2u.fit
pddf	/app/data/pr_computation/f2/1f2u/1f2u.pr.out
profile	/app/data/saxs_computation/f2/1f2u/1f2u.dat

Crystal Structure of RAD50 ABC-ATPase

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (5)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 non-polymer

Entity 4 non-polymer

Entity 5 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)