1fc5
CRYSTAL STRUCTURE OF MOLYBDOPTERIN BIOSYNTHESIS MOEA PROTEIN
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 1fc5 |
| 沉积日期 deposition_date | 2000-07-17 |
| 结构标题 title | CRYSTAL STRUCTURE OF MOLYBDOPTERIN BIOSYNTHESIS MOEA PROTEIN |
| 关键词 keywords | ;molybdopterin, four modules, with magnesium, Montreal-Kingston Bacterial Structural Genomics Initiative, BSGI, Structural Genomics, BIOSYNTHETIC PROTEIN ;; BIOSYNTHETIC PROTEIN |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 32.97 Å |
| 回转半径 Rg (电子) rg_electron | 32.25 Å |
| 零角强度 I(0) i0 | 123907000.00 |
| 分子量 molecular_weight | 87225.0 kDa |
| 排除体积 excluded_volume | 108540 ų |
| 包络体积 envelope_volume | 141850 ų |
| 水化壳体积 shell_volume | 38452 ų |
| 包络直径 envelope_diameter | 127.5 Å |
| 壳层 Rg shell_rg | 37.16 Å |
| 包络 Rg envelope_rg | 32.25 Å |
| 形状 Rg shape_rg | 32.23 Å |
| 总 Rg total_rg | 32.74 Å |
| 总原子数 total_atoms | 6089 |
| 残基数 n_residues | 793 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 121.9 Å |
| Rg (实空间) rg_real | 33.30 Å |
| Rg 误差 (实空间) rg_real_error | 1.41 Å |
| I(0) (实空间) i0_real | 1.2390e+08 |
| I(0) 误差 (实空间) i0_real_error | 2.1500e+06 |
| Rg (倒空间) rg_reciprocal | 33.16 Å |
| I(0) (倒空间) i0_reciprocal | 123900000.0000 |
| 解质量估计 total_estimate | 0.8065 |
| 解质量评级 solution_quality | GOOD a GOOD solution |
| P(r) 峰数 n_peaks | 2 |
| 主峰位置 r_peak_primary | 35.5 Å |
| 偏度 Skewness skewness | 0.646 |
| 峰度 Kurtosis kurtosis | 0.200 |
| 角度范围 angular_range | — – 0.2400 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 17940000.0000 |
| 实空间数据点数 n_real_points | 49 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.582; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.818; Smooth: 0.915 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (3)
6. 折叠分类 (SCOP + CATH) 14 domains
SCOP 2.08 (6 domains)
| 结构域编号 domain_id | d1fc5a1 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.85 — beta-clip |
| 超家族 Superfamily superfamily | b.85.6 — MoeA C-terminal domain-like |
| 家族 Family family | b.85.6.1 — MoeA C-terminal domain-like |
| 结构域编号 domain_id | d1fc5a2 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.103 — MoeA N-terminal region -like |
| 超家族 Superfamily superfamily | b.103.1 — MoeA N-terminal region -like |
| 家族 Family family | b.103.1.1 — MoeA N-terminal region -like |
| 结构域编号 domain_id | d1fc5a3 |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.57 — Molybdenum cofactor biosynthesis proteins |
| 超家族 Superfamily superfamily | c.57.1 — Molybdenum cofactor biosynthesis proteins |
| 家族 Family family | c.57.1.2 — MoeA central domain-like |
| 结构域编号 domain_id | d1fc5b1 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.85 — beta-clip |
| 超家族 Superfamily superfamily | b.85.6 — MoeA C-terminal domain-like |
| 家族 Family family | b.85.6.1 — MoeA C-terminal domain-like |
| 结构域编号 domain_id | d1fc5b2 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.103 — MoeA N-terminal region -like |
| 超家族 Superfamily superfamily | b.103.1 — MoeA N-terminal region -like |
| 家族 Family family | b.103.1.1 — MoeA N-terminal region -like |
| 结构域编号 domain_id | d1fc5b3 |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.57 — Molybdenum cofactor biosynthesis proteins |
| 超家族 Superfamily superfamily | c.57.1 — Molybdenum cofactor biosynthesis proteins |
| 家族 Family family | c.57.1.2 — MoeA central domain-like |
CATH v4.4 (8 domains)
| 结构域编号 domain_id | 1fc5A01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 980 — Molybdenum Cofactor Biosythetic Enzyme; Chain A |
| 同源超家族 H-superfamily homologous superfamily | 10 — MoaB/Mog-like domain |
| 结构域编号 domain_id | 1fc5A02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 105 — Molybdopterin biosynthesis moea protein, domain 2 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Molybdopterin biosynthesis moea protein, domain 2 |
| 结构域编号 domain_id | 1fc5A03 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 170 — Beta Complex |
| 拓扑 Topology topology | 190 — Molybdopterin biosynthesis moeA protein; domain 3 |
| 同源超家族 H-superfamily homologous superfamily | 11 — Molybdopterin biosynthesis moea protein, domain 3. |
| 结构域编号 domain_id | 1fc5A04 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 40 — Beta Barrel |
| 拓扑 Topology topology | 340 — Beta-clip |
| 同源超家族 H-superfamily homologous superfamily | 10 — MoeA, C-terminal, domain IV |
| 结构域编号 domain_id | 1fc5B01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 980 — Molybdenum Cofactor Biosythetic Enzyme; Chain A |
| 同源超家族 H-superfamily homologous superfamily | 10 — MoaB/Mog-like domain |
| 结构域编号 domain_id | 1fc5B02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 105 — Molybdopterin biosynthesis moea protein, domain 2 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Molybdopterin biosynthesis moea protein, domain 2 |
| 结构域编号 domain_id | 1fc5B03 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 170 — Beta Complex |
| 拓扑 Topology topology | 190 — Molybdopterin biosynthesis moeA protein; domain 3 |
| 同源超家族 H-superfamily homologous superfamily | 11 — Molybdopterin biosynthesis moea protein, domain 3. |
| 结构域编号 domain_id | 1fc5B04 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 40 — Beta Barrel |
| 拓扑 Topology topology | 340 — Beta-clip |
| 同源超家族 H-superfamily homologous superfamily | 10 — MoeA, C-terminal, domain IV |