SAXSdb — 1fmd

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1. Protein Identity and Related Structures Protein Identity & Related Structures

FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1)

Foot-and-mouth disease virus

State in the Current Structure

Assembly	Oligomeric State	Construct	Mutations and Modifications	Ligands, Ions and Associated Components	Method and Experimental Conditions	Structure Quality
1	Protein heterocomplex Heteromer Protein × 240 PDB declaration: complete icosahedral assembly（240） Consistent with protein copy count	Chain 1； UniProt 1–208	Not recorded	FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) × 60 （Q9YQQ5） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) × 60 （Q9YQQ5） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) × 60 （P87677）	X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions	Resolution 3.50 Å
2	Protein heterocomplex Heteromer Protein × 4 PDB declaration: tetrameric（4） Consistent with protein copy count	Chain 1； UniProt 1–208	Not recorded	FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) × 1 （Q9YQQ5） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) × 1 （Q9YQQ5） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) × 1 （P87677）	X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions	Resolution 3.50 Å
3	Protein heterocomplex Heteromer Protein × 20 PDB declaration: eicosameric（20） Consistent with protein copy count	Chain 1； UniProt 1–208	Not recorded	FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) × 5 （Q9YQQ5） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) × 5 （Q9YQQ5） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) × 5 （P87677）	X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions	Resolution 3.50 Å
4	Protein heterocomplex Heteromer Protein × 24 PDB declaration: 24-meric（24） Consistent with protein copy count	Chain 1； UniProt 1–208	Not recorded	FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) × 6 （Q9YQQ5） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) × 6 （Q9YQQ5） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) × 6 （P87677）	X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions	Resolution 3.50 Å
5	Protein heterocomplex Heteromer Protein × 4 PDB declaration: tetrameric（4） Consistent with protein copy count	Chain 1； UniProt 1–208	Not recorded	FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) × 1 （Q9YQQ5） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) × 1 （Q9YQQ5） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) × 1 （P87677）	X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions	Resolution 3.50 Å
6	Protein heterocomplex Heteromer Protein × 20 PDB declaration: eicosameric（20） Consistent with protein copy count	Chain 1； UniProt 1–208	Not recorded	FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) × 5 （Q9YQQ5） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) × 5 （Q9YQQ5） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) × 5 （P87677）	X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions	Resolution 3.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence

UniProt name	Q65095_9PICO
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain 1； PDBConstruct 1–208； UniProt 1–208

FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2)

Foot-and-mouth disease virus

UniProt Q9YQQ5

State in the Current Structure

Assembly	Oligomeric State	Construct	Mutations and Modifications	Ligands, Ions and Associated Components	Method and Experimental Conditions	Structure Quality
1	Protein heterocomplex Heteromer Protein × 240 PDB declaration: complete icosahedral assembly（240） Consistent with protein copy count	Chain 2； UniProt 287–504 Chain 3； UniProt 505–723	Not recorded	FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) × 60 （Q65095） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) × 60 （P87677）	X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions	Resolution 3.50 Å
2	Protein heterocomplex Heteromer Protein × 4 PDB declaration: tetrameric（4） Consistent with protein copy count	Chain 2； UniProt 287–504 Chain 3； UniProt 505–723	Not recorded	FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) × 1 （Q65095） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) × 1 （P87677）	X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions	Resolution 3.50 Å
3	Protein heterocomplex Heteromer Protein × 20 PDB declaration: eicosameric（20） Consistent with protein copy count	Chain 2； UniProt 287–504 Chain 3； UniProt 505–723	Not recorded	FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) × 5 （Q65095） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) × 5 （P87677）	X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions	Resolution 3.50 Å
4	Protein heterocomplex Heteromer Protein × 24 PDB declaration: 24-meric（24） Consistent with protein copy count	Chain 2； UniProt 287–504 Chain 3； UniProt 505–723	Not recorded	FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) × 6 （Q65095） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) × 6 （P87677）	X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions	Resolution 3.50 Å
5	Protein heterocomplex Heteromer Protein × 4 PDB declaration: tetrameric（4） Consistent with protein copy count	Chain 2； UniProt 287–504 Chain 3； UniProt 505–723	Not recorded	FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) × 1 （Q65095） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) × 1 （P87677）	X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions	Resolution 3.50 Å
6	Protein heterocomplex Heteromer Protein × 20 PDB declaration: eicosameric（20） Consistent with protein copy count	Chain 2； UniProt 287–504 Chain 3； UniProt 505–723	Not recorded	FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) × 5 （Q65095） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) × 5 （P87677）	X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions	Resolution 3.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence

UniProt name	Q9YQQ5_9PICO
Isoform	—
PDB entities	2, 3
Chains and sequence ranges	Author chain 2； PDBConstruct 1–218； UniProt 287–504 Author chain 3； PDBConstruct 1–219； UniProt 505–723

FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4)

Foot-and-mouth disease virus

UniProt P87677

State in the Current Structure

Assembly	Oligomeric State	Construct	Mutations and Modifications	Ligands, Ions and Associated Components	Method and Experimental Conditions	Structure Quality
1	Protein heterocomplex Heteromer Protein × 240 PDB declaration: complete icosahedral assembly（240） Consistent with protein copy count	Chain 4； UniProt 1–85	Not recorded	FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) × 60 （Q65095） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) × 60 （Q9YQQ5） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) × 60 （Q9YQQ5）	X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions	Resolution 3.50 Å
2	Protein heterocomplex Heteromer Protein × 4 PDB declaration: tetrameric（4） Consistent with protein copy count	Chain 4； UniProt 1–85	Not recorded	FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) × 1 （Q65095） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) × 1 （Q9YQQ5） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) × 1 （Q9YQQ5）	X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions	Resolution 3.50 Å
3	Protein heterocomplex Heteromer Protein × 20 PDB declaration: eicosameric（20） Consistent with protein copy count	Chain 4； UniProt 1–85	Not recorded	FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) × 5 （Q65095） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) × 5 （Q9YQQ5） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) × 5 （Q9YQQ5）	X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions	Resolution 3.50 Å
4	Protein heterocomplex Heteromer Protein × 24 PDB declaration: 24-meric（24） Consistent with protein copy count	Chain 4； UniProt 1–85	Not recorded	FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) × 6 （Q65095） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) × 6 （Q9YQQ5） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) × 6 （Q9YQQ5）	X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions	Resolution 3.50 Å
5	Protein heterocomplex Heteromer Protein × 4 PDB declaration: tetrameric（4） Consistent with protein copy count	Chain 4； UniProt 1–85	Not recorded	FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) × 1 （Q65095） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) × 1 （Q9YQQ5） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) × 1 （Q9YQQ5）	X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions	Resolution 3.50 Å
6	Protein heterocomplex Heteromer Protein × 20 PDB declaration: eicosameric（20） Consistent with protein copy count	Chain 4； UniProt 1–85	Not recorded	FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) × 5 （Q65095） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) × 5 （Q9YQQ5） FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) × 5 （Q9YQQ5）	X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions	Resolution 3.50 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB	Difference from Current Entry 1FMD	Assembly / Oligomeric State	Construct	Mutations and Modifications	Ligands, Ions and Non-polymers	Method and Experimental Conditions	Structure Quality
1FOD STRUCTURE OF A MAJOR IMMUNOGENIC SITE ON FOOT-AND-MOUTH DISEASE VIRUS Deposited 1993-10-27	Different structure-quality metrics	Assembly 1 Protein heterocomplex Heteromer；Protein × 240 PDB declaration: complete icosahedral assembly	Chain 4 1–85（85 aa）	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION mmCIF provides none of the parsed conditions	Resolution 2.60 Å
1FOD STRUCTURE OF A MAJOR IMMUNOGENIC SITE ON FOOT-AND-MOUTH DISEASE VIRUS Deposited 1993-10-27	Different structure-quality metrics	Assembly 2 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric	Chain 4 1–85（85 aa）	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION mmCIF provides none of the parsed conditions	Resolution 2.60 Å
1FOD STRUCTURE OF A MAJOR IMMUNOGENIC SITE ON FOOT-AND-MOUTH DISEASE VIRUS Deposited 1993-10-27	Different structure-quality metrics	Assembly 3 Protein heterocomplex Heteromer；Protein × 20 PDB declaration: eicosameric	Chain 4 1–85（85 aa）	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION mmCIF provides none of the parsed conditions	Resolution 2.60 Å
1FOD STRUCTURE OF A MAJOR IMMUNOGENIC SITE ON FOOT-AND-MOUTH DISEASE VIRUS Deposited 1993-10-27	Different structure-quality metrics	Assembly 4 Protein heterocomplex Heteromer；Protein × 24 PDB declaration: 24-meric	Chain 4 1–85（85 aa）	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION mmCIF provides none of the parsed conditions	Resolution 2.60 Å
1FOD STRUCTURE OF A MAJOR IMMUNOGENIC SITE ON FOOT-AND-MOUTH DISEASE VIRUS Deposited 1993-10-27	Different structure-quality metrics	Assembly 5 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric	Chain 4 1–85（85 aa）	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION mmCIF provides none of the parsed conditions	Resolution 2.60 Å
1FOD STRUCTURE OF A MAJOR IMMUNOGENIC SITE ON FOOT-AND-MOUTH DISEASE VIRUS Deposited 1993-10-27	Different structure-quality metrics	Assembly 6 Protein heterocomplex Heteromer；Protein × 20 PDB declaration: eicosameric	Chain 4 1–85（85 aa）	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION mmCIF provides none of the parsed conditions	Resolution 2.60 Å

1 other PDB entries and 6 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence

UniProt name	P87677_9PICO
Isoform	—
PDB entities	4
Chains and sequence ranges	Author chain 4； PDBConstruct 1–85； UniProt 1–85

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	1fmd
Deposition date deposition_date	1994-02-10
Structure title title	THE STRUCTURE AND ANTIGENICITY OF A TYPE C FOOT-AND-MOUTH DISEASE VIRUS
Keywords keywords	VIRUS, Icosahedral virus; VIRUS
Experimental Method method	X-RAY DIFFRACTION

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3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier	31.42 Å
Radius of gyration Rg (electron density) rg_electron	30.84 Å
Forward intensity I(0) i0	88744600.00
Molecular weight molecular_weight	73278.0 kDa
Excluded volume excluded_volume	91288 Å³
Envelope volume envelope_volume	129720 Å³
Hydration-shell volume shell_volume	35583 Å³
Envelope diameter envelope_diameter	115.6 Å
Shell Rg shell_rg	36.88 Å
Envelope Rg envelope_rg	31.81 Å
Shape Rg shape_rg	30.82 Å
Total Rg total_rg	31.47 Å
Total atoms total_atoms	5168
Residues n_residues	670
Spherical-harmonic order n_harmonics	20
q range q_range	— – 0.5000 Å⁻¹
Data points n_points	101
Shell type shell_type	directional
Solvent electron density solvent_density	0.3340 e/Å³
Shell contrast contrast_shell	0.0300 e/Å³
CRYSOL version crysol_version	4.1.3

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4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax	107.9 Å
Rg (real space) rg_real	31.46 Å
Rg uncertainty (real space) rg_real_error	0.99 Å
I(0) (real space) i0_real	8.8740e+07
I(0) uncertainty (real space) i0_real_error	1.3020e+06
Rg (reciprocal space) rg_reciprocal	31.45 Å
I(0) (reciprocal space) i0_reciprocal	88740000.0000
Solution quality estimate total_estimate	0.8828
Solution quality rating solution_quality	GOOD a GOOD solution
P(r) peaks n_peaks	2
Primary peak position r_peak_primary	34.5 Å
Skewness Skewness skewness	0.366
Kurtosis Kurtosis kurtosis	-0.345
Angular range angular_range	— – 0.2500 Å⁻¹
Current regularization parameter α current_alpha	0.0000
Highest regularization parameter α highest_alpha	16100000.0000
Real-space data points n_real_points	51
GNOM version gnom_version	4.1.3
Quality Criteria quality_criteria	AN1: 0.000; Oscil: 0.841; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.978; Smooth: 0.970

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5. Crystallography and Experiment 5. Crystallography & Experiment

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6. Entities and Polymers Entities & Polymers (4)

Entity 1 Entity 1 polymer

Description description	FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1)
Molecular weight formula_weight	22694.6 kDa
Source method src_method	man
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	1
Atom count atom_count	5168

TTTTGESADPVTTTVENYGGETQVQRRHHTDVAFVLDRFVKVTVSDNQHTLDVMQAHKDNIVGALLRAATYYFSDLEIAVTHTGKLTWVPNGAPVSALNNTTNPTAYHKGPVTRLALPYTAPHRVLATAYTGTTTYTASARGDLAHLTTTHAAHLPTSFNFGAVKAETITELLVRMKRAELYCPRPILPIQPTGDRHKQPLVAPAKQL

来源 Source

来源生物 organism	Foot-and-mouth disease virus
NCBI Class编号 ncbi_taxonomy_id	12110
宿主生物 host_organism	Mesocricetus auratus

Entity 2 Entity 2 polymer

Description description	FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2)
Molecular weight formula_weight	24297.4 kDa
Source method src_method	man
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	2

DKKTEETTLLEDRILTTRNGHTTSTTQSSVGVTFGYATAEDSTSGPNTSALETRVHQAERFFKMALFDWVPSQNFGHMHKVVLPHEPKGVYGGLVKSYAYMRNGWDVEVTAVGNQFNGGCLLVALVPEMGDISDREKYQLTLYPHQFINPRTNMTAHITVPYVGVNRYDQYKQHRPWTLVVMVVAPLTTNTAGAQQIKVYANIAPTNVHVAGELPSKE

来源 Source

来源生物 organism	Foot-and-mouth disease virus
NCBI Class编号 ncbi_taxonomy_id	12110
宿主生物 host_organism	Mesocricetus auratus

Entity 3 Entity 3 polymer

Description description	FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3)
Molecular weight formula_weight	24020.9 kDa
Source method src_method	man
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	3

GIFPVACSDGYGNMVTTDPKTADPAYGKVYNPPRTALPGRFTNYLDVAEACPTFLMFENVPYVSTRTDGQRLLAKFDVSLAAKHMSNTYLAGLAQYYTQYTGTINLHFMFTGPTDAKARYMVAYVPPGMDAPDNPEEAAHCIHAEWDTGLNSKFTFSIPYISAADYTYTASHEAETTCVQGWVCVYQITHGKADADALVVSASAGKDFELRLPVDARQQ

来源 Source

来源生物 organism	Foot-and-mouth disease virus
NCBI Class编号 ncbi_taxonomy_id	12110
宿主生物 host_organism	Mesocricetus auratus

Entity 4 Entity 4 polymer

Description description	FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4)
Molecular weight formula_weight	8778.1 kDa
Source method src_method	man
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	4

GAGQSSPATGSQNQSGNTGSIINNYYMQQYQNSMDTQLGDNAISGGSNEGSTDTTSTHTTNTQNNDWFSKLASSAFSGLFGALLA

来源 Source

来源生物 organism	Foot-and-mouth disease virus
NCBI Class编号 ncbi_taxonomy_id	12110
宿主生物 host_organism	Mesocricetus auratus

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7. Fold Classification (SCOP + CATH) 7 domains

SCOP 2.08 (3 domains)

Domain ID domain_id	d1fmd.1
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.1 — Picornaviridae-like VP (VP1, VP2, VP3 and VP4)

Domain ID domain_id	d1fmd1_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.1 — Picornaviridae-like VP (VP1, VP2, VP3 and VP4)

Domain ID domain_id	d1fmd3_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.1 — Picornaviridae-like VP (VP1, VP2, VP3 and VP4)

CATH v4.4 (4 domains)

Domain ID domain_id	1fmd100
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	1fmd200
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	1fmd300
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	1fmd400
Class class	4 — Few Secondary Structures
Architecture architecture	10 — Irregular
Topology topology	90 — Foot-And-Mouth Disease Virus, subunit 4
Homologous superfamily homologous superfamily	10 — Capsid protein VP4 superfamily, Picornavirus

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8. Citations (3)

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Unit-cell length a length_a	347.600 Å
Unit-cell length b length_b	347.600 Å
Unit-cell length c length_c	347.600 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	90.00 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	120

Space group space_group	I 2 3
Space-group number int_tables_number	197
Crystal system crystal_system	—

Resolution resolution	3.500 Å
Low-resolution limit resolution_low	27.000 Å
R factor r_factor	0.2040
R_work r_work	0.2040
R_free r_free	—

fit	/app/data/saxs_computation/fm/1fmd/1fmd.fit
pddf	/app/data/pr_computation/fm/1fmd/1fmd.pr.out
profile	/app/data/saxs_computation/fm/1fmd/1fmd.dat

THE STRUCTURE AND ANTIGENICITY OF A TYPE C FOOT-AND-MOUTH DISEASE VIRUS

1. Protein Identity and Related Structures Protein Identity & Related Structures

FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1)

State in the Current Structure

Other States of the Same Protein in the Database

FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2)

State in the Current Structure

Other States of the Same Protein in the Database

FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4)

State in the Current Structure

Other States of the Same Protein in the Database

SAXS scattering curve SAXS Profile

P(r) Distance Distribution P(r) Distribution

2. Structure Basics 2. Structure Basics

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

5. Crystallography and Experiment 5. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

6. Entities and Polymers Entities & Polymers (4)

Entity 1 Entity 1 polymer

Polymer Polymer

来源 Source

Entity 2 Entity 2 polymer

Polymer Polymer

来源 Source

Entity 3 Entity 3 polymer

Polymer Polymer

来源 Source

Entity 4 Entity 4 polymer

Polymer Polymer

来源 Source

7. Fold Classification (SCOP + CATH) 7 domains

SCOP 2.08 (3 domains)

CATH v4.4 (4 domains)

8. Citations (3)

9. Files and Curves (10)

Files (7)

Curves (3)