1g5g
FRAGMENT OF FUSION PROTEIN FROM NEWCASTLE DISEASE VIRUS
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 1g5g |
| 沉积日期 deposition_date | 2000-11-01 |
| 结构标题 title | FRAGMENT OF FUSION PROTEIN FROM NEWCASTLE DISEASE VIRUS |
| 关键词 keywords | fusion protein, NDV, Newcastle disease virus, paramyxovirus, Viral protein; VIRAL PROTEIN |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 48.73 Å |
| 回转半径 Rg (电子) rg_electron | 48.62 Å |
| 零角强度 I(0) i0 | 785619000.00 |
| 分子量 molecular_weight | 233850.0 kDa |
| 排除体积 excluded_volume | 293710 ų |
| 包络体积 envelope_volume | 413590 ų |
| 水化壳体积 shell_volume | 71594 ų |
| 包络直径 envelope_diameter | 183.5 Å |
| 壳层 Rg shell_rg | 51.93 Å |
| 包络 Rg envelope_rg | 48.21 Å |
| 形状 Rg shape_rg | 48.59 Å |
| 总 Rg total_rg | 48.83 Å |
| 总原子数 total_atoms | 16341 |
| 残基数 n_residues | 2142 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 170.6 Å |
| Rg (实空间) rg_real | 48.90 Å |
| Rg 误差 (实空间) rg_real_error | 1.61 Å |
| I(0) (实空间) i0_real | 7.8560e+08 |
| I(0) 误差 (实空间) i0_real_error | 1.4940e+07 |
| Rg (倒空间) rg_reciprocal | 48.74 Å |
| I(0) (倒空间) i0_reciprocal | 785400000.0000 |
| 解质量估计 total_estimate | 0.8673 |
| 解质量评级 solution_quality | GOOD a GOOD solution |
| P(r) 峰数 n_peaks | 2 |
| 主峰位置 r_peak_primary | 48.0 Å |
| 偏度 Skewness skewness | 0.396 |
| 峰度 Kurtosis kurtosis | -0.279 |
| 角度范围 angular_range | — – 0.1600 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 79780000.0000 |
| 实空间数据点数 n_real_points | 33 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.816; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.974; Smooth: 0.850 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (4)
6. 折叠分类 (SCOP + CATH) 30 domains
SCOP 2.08 (12 domains)
| 结构域编号 domain_id | d1g5ga1 |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.12 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 超家族 Superfamily superfamily | f.12.1 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 家族 Family family | f.12.1.1 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 结构域编号 domain_id | d1g5ga2 |
| 类 Class class | h — Coiled coil proteins |
| 折叠类型 Fold fold | h.3 — Stalk segment of viral fusion proteins |
| 超家族 Superfamily superfamily | h.3.2 — Virus ectodomain |
| 家族 Family family | h.3.2.1 — Virus ectodomain |
| 结构域编号 domain_id | d1g5gb1 |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.12 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 超家族 Superfamily superfamily | f.12.1 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 家族 Family family | f.12.1.1 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 结构域编号 domain_id | d1g5gb2 |
| 类 Class class | h — Coiled coil proteins |
| 折叠类型 Fold fold | h.3 — Stalk segment of viral fusion proteins |
| 超家族 Superfamily superfamily | h.3.2 — Virus ectodomain |
| 家族 Family family | h.3.2.1 — Virus ectodomain |
| 结构域编号 domain_id | d1g5gc1 |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.12 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 超家族 Superfamily superfamily | f.12.1 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 家族 Family family | f.12.1.1 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 结构域编号 domain_id | d1g5gc2 |
| 类 Class class | h — Coiled coil proteins |
| 折叠类型 Fold fold | h.3 — Stalk segment of viral fusion proteins |
| 超家族 Superfamily superfamily | h.3.2 — Virus ectodomain |
| 家族 Family family | h.3.2.1 — Virus ectodomain |
| 结构域编号 domain_id | d1g5gd1 |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.12 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 超家族 Superfamily superfamily | f.12.1 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 家族 Family family | f.12.1.1 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 结构域编号 domain_id | d1g5gd2 |
| 类 Class class | h — Coiled coil proteins |
| 折叠类型 Fold fold | h.3 — Stalk segment of viral fusion proteins |
| 超家族 Superfamily superfamily | h.3.2 — Virus ectodomain |
| 家族 Family family | h.3.2.1 — Virus ectodomain |
| 结构域编号 domain_id | d1g5ge1 |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.12 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 超家族 Superfamily superfamily | f.12.1 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 家族 Family family | f.12.1.1 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 结构域编号 domain_id | d1g5ge2 |
| 类 Class class | h — Coiled coil proteins |
| 折叠类型 Fold fold | h.3 — Stalk segment of viral fusion proteins |
| 超家族 Superfamily superfamily | h.3.2 — Virus ectodomain |
| 家族 Family family | h.3.2.1 — Virus ectodomain |
| 结构域编号 domain_id | d1g5gf1 |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.12 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 超家族 Superfamily superfamily | f.12.1 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 家族 Family family | f.12.1.1 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 结构域编号 domain_id | d1g5gf2 |
| 类 Class class | h — Coiled coil proteins |
| 折叠类型 Fold fold | h.3 — Stalk segment of viral fusion proteins |
| 超家族 Superfamily superfamily | h.3.2 — Virus ectodomain |
| 家族 Family family | h.3.2.1 — Virus ectodomain |
CATH v4.4 (18 domains)
| 结构域编号 domain_id | 1g5gA01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 40 — Beta Barrel |
| 拓扑 Topology topology | 490 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 同源超家族 H-superfamily homologous superfamily | 10 — Newcastle disease virus like domain |
| 结构域编号 domain_id | 1g5gA02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 2480 — |
| 结构域编号 domain_id | 1g5gA03 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 1690 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 结构域编号 domain_id | 1g5gB01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 40 — Beta Barrel |
| 拓扑 Topology topology | 490 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 同源超家族 H-superfamily homologous superfamily | 10 — Newcastle disease virus like domain |
| 结构域编号 domain_id | 1g5gB02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 2480 — |
| 结构域编号 domain_id | 1g5gB03 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 1690 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 结构域编号 domain_id | 1g5gC01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 40 — Beta Barrel |
| 拓扑 Topology topology | 490 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 同源超家族 H-superfamily homologous superfamily | 10 — Newcastle disease virus like domain |
| 结构域编号 domain_id | 1g5gC02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 2480 — |
| 结构域编号 domain_id | 1g5gC03 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 1690 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 结构域编号 domain_id | 1g5gD01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 40 — Beta Barrel |
| 拓扑 Topology topology | 490 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 同源超家族 H-superfamily homologous superfamily | 10 — Newcastle disease virus like domain |
| 结构域编号 domain_id | 1g5gD02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 2480 — |
| 结构域编号 domain_id | 1g5gD03 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 1690 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 结构域编号 domain_id | 1g5gE01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 40 — Beta Barrel |
| 拓扑 Topology topology | 490 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 同源超家族 H-superfamily homologous superfamily | 10 — Newcastle disease virus like domain |
| 结构域编号 domain_id | 1g5gE02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 2480 — |
| 结构域编号 domain_id | 1g5gE03 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 1690 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 结构域编号 domain_id | 1g5gF01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 40 — Beta Barrel |
| 拓扑 Topology topology | 490 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 同源超家族 H-superfamily homologous superfamily | 10 — Newcastle disease virus like domain |
| 结构域编号 domain_id | 1g5gF02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 2480 — |
| 结构域编号 domain_id | 1g5gF03 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 1690 — Head and neck region of the ectodomain of NDV fusion glycoprotein |