1g5g

FRAGMENT OF FUSION PROTEIN FROM NEWCASTLE DISEASE VIRUS

Method: X-RAY DIFFRACTION

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1. 蛋白身份与相关结构 Protein Identity & Related Structures

Fusion glycoprotein F0

Avian orthoavulavirus 1

当前结构中的状态

Assembly	物理组成	蛋白状态	分子拷贝数	共同组分	数据核对
1	其他组合	同源多聚体	蛋白 3 其他聚合物 5	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 4 beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 2-acetamido-2-deoxy-beta-D-glucopyranose × 1	与蛋白数一致
2	其他组合	同源多聚体	蛋白 3 其他聚合物 3	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 3 2-acetamido-2-deoxy-beta-D-glucopyranose × 3	与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据

UniProt名称	A9LSB1_9MONO
Isoform	—
PDB实体	1
链与序列区间	作者链 A； PDB构建体 1–468； UniProt 32–499 作者链 B； PDB构建体 1–468； UniProt 32–499 作者链 C； PDB构建体 1–468； UniProt 32–499 作者链 D； PDB构建体 1–468； UniProt 32–499 作者链 E； PDB构建体 1–468； UniProt 32–499 作者链 F； PDB构建体 1–468； UniProt 32–499

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。链映射与序列区间收在“数据证据”中；数据库内部编号、导入时间和 assembly 操作表达式仅用于维护，因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id	1g5g
沉积日期 deposition_date	2000-11-01
结构标题 title	FRAGMENT OF FUSION PROTEIN FROM NEWCASTLE DISEASE VIRUS
关键词 keywords	fusion protein, NDV, Newcastle disease virus, paramyxovirus, Viral protein; VIRAL PROTEIN
实验方法 method	X-RAY DIFFRACTION

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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

1g5g__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

1g5g__assembly_1__model_1 | I(q)

100 个绘图点；横轴和纵轴均采用对数尺度。

1g5g__assembly_1__model_1 | P(r) · Pending

P(r) 将按相同 assembly/model 分别计算和展示。

Rg（Guinier）	35.27 Å
Rg（电子密度）	34.93 Å
总 Rg	35.40 Å
原子数	8190
残基数	1071
排除体积	147210 Å³
最大 q	0.500 Å⁻¹

Assembly	Model	结构单元	聚集说明	状态	CRYSOL	操作
1	1	`1g5g__assembly_1__model_1`	trimeric （3）	成功	4.1.3-1-20251215 (887e7ef)	查看下载
2	1	`1g5g__assembly_2__model_1`	trimeric （3）	成功	4.1.3-1-20251215 (887e7ef)	查看下载

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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (4)

实体 1 Entity 1 polymer

描述 description	Fusion glycoprotein F0
分子量 formula_weight	51086.9 kDa
来源方法 src_method	man
拷贝数 entity_count	6

聚合物 Polymer

聚合物类型 type	polypeptide(L)
链编号 strand_id	A,B,C,D,E,F
原子数 atom_count	16341

LDGRPLAAAGIVVTGDKAVNIYTSSQTGSIIIKLLPNMPKDKEACAKAPLEAYNRTLTTLLTPLGDSIRRIQESVTTSGGGKQGRLIGAIIGGVALGVATAAQITAASALIQANQNAANILRLKESIAATNEAVHEVTNGLSQLAVAVGKMQQFVNDQFNKTAQELDCIKITQQVGVELNLYLTELTTVFGPQITSPALTQLTIQALYNLAGGNMDYLLTKLGVGNNQLSSLISSGLITGNPILYDSQTQLLGIQVTLPSVGNLNNMRATYLETLSVSTTKGFASALVPKVVTQVGSVIEELDTSYCIETDLDLYCTRIVTFPMSPGIYSCLSGNTSACMYSKTEGALTTPYMTLKGSVIANCKMTTCRCADPPGIISQNYGEAVSLIDRQSCNILSLDGITLRLSGEFDATYQKNISIQDSQVIVTGNLDISTELGNVNNSISNALDKLEESNSKLDKVNVKLTSTSSREQKLISEEDLN

来源 Source

来源生物 organism	Avian orthoavulavirus 1
NCBI 分类编号 ncbi_taxonomy_id	2560319

实体 2 Entity 2 branched

描述 description	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
分子量 formula_weight	424.4 kDa
来源方法 src_method	man
拷贝数 entity_count	7

实体 3 Entity 3 branched

描述 description	beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
分子量 formula_weight	586.5 kDa
来源方法 src_method	man
拷贝数 entity_count	1

实体 4 Entity 4 non-polymer

描述 description	2-acetamido-2-deoxy-beta-D-glucopyranose
分子量 formula_weight	221.2 kDa
来源方法 src_method	man
拷贝数 entity_count	4

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6. 折叠分类 (SCOP + CATH) 30 domains

SCOP 2.08 (12 domains)

结构域编号 domain_id	d1g5ga1
类 Class class	f — Membrane and cell surface proteins and peptides
折叠类型 Fold fold	f.12 — Head and neck region of the ectodomain of NDV fusion glycoprotein
超家族 Superfamily superfamily	f.12.1 — Head and neck region of the ectodomain of NDV fusion glycoprotein
家族 Family family	f.12.1.1 — Head and neck region of the ectodomain of NDV fusion glycoprotein

结构域编号 domain_id	d1g5ga2
类 Class class	h — Coiled coil proteins
折叠类型 Fold fold	h.3 — Stalk segment of viral fusion proteins
超家族 Superfamily superfamily	h.3.2 — Virus ectodomain
家族 Family family	h.3.2.1 — Virus ectodomain

结构域编号 domain_id	d1g5gb1
类 Class class	f — Membrane and cell surface proteins and peptides
折叠类型 Fold fold	f.12 — Head and neck region of the ectodomain of NDV fusion glycoprotein
超家族 Superfamily superfamily	f.12.1 — Head and neck region of the ectodomain of NDV fusion glycoprotein
家族 Family family	f.12.1.1 — Head and neck region of the ectodomain of NDV fusion glycoprotein

结构域编号 domain_id	d1g5gb2
类 Class class	h — Coiled coil proteins
折叠类型 Fold fold	h.3 — Stalk segment of viral fusion proteins
超家族 Superfamily superfamily	h.3.2 — Virus ectodomain
家族 Family family	h.3.2.1 — Virus ectodomain

结构域编号 domain_id	d1g5gc1
类 Class class	f — Membrane and cell surface proteins and peptides
折叠类型 Fold fold	f.12 — Head and neck region of the ectodomain of NDV fusion glycoprotein
超家族 Superfamily superfamily	f.12.1 — Head and neck region of the ectodomain of NDV fusion glycoprotein
家族 Family family	f.12.1.1 — Head and neck region of the ectodomain of NDV fusion glycoprotein

结构域编号 domain_id	d1g5gc2
类 Class class	h — Coiled coil proteins
折叠类型 Fold fold	h.3 — Stalk segment of viral fusion proteins
超家族 Superfamily superfamily	h.3.2 — Virus ectodomain
家族 Family family	h.3.2.1 — Virus ectodomain

结构域编号 domain_id	d1g5gd1
类 Class class	f — Membrane and cell surface proteins and peptides
折叠类型 Fold fold	f.12 — Head and neck region of the ectodomain of NDV fusion glycoprotein
超家族 Superfamily superfamily	f.12.1 — Head and neck region of the ectodomain of NDV fusion glycoprotein
家族 Family family	f.12.1.1 — Head and neck region of the ectodomain of NDV fusion glycoprotein

结构域编号 domain_id	d1g5gd2
类 Class class	h — Coiled coil proteins
折叠类型 Fold fold	h.3 — Stalk segment of viral fusion proteins
超家族 Superfamily superfamily	h.3.2 — Virus ectodomain
家族 Family family	h.3.2.1 — Virus ectodomain

结构域编号 domain_id	d1g5ge1
类 Class class	f — Membrane and cell surface proteins and peptides
折叠类型 Fold fold	f.12 — Head and neck region of the ectodomain of NDV fusion glycoprotein
超家族 Superfamily superfamily	f.12.1 — Head and neck region of the ectodomain of NDV fusion glycoprotein
家族 Family family	f.12.1.1 — Head and neck region of the ectodomain of NDV fusion glycoprotein

结构域编号 domain_id	d1g5ge2
类 Class class	h — Coiled coil proteins
折叠类型 Fold fold	h.3 — Stalk segment of viral fusion proteins
超家族 Superfamily superfamily	h.3.2 — Virus ectodomain
家族 Family family	h.3.2.1 — Virus ectodomain

结构域编号 domain_id	d1g5gf1
类 Class class	f — Membrane and cell surface proteins and peptides
折叠类型 Fold fold	f.12 — Head and neck region of the ectodomain of NDV fusion glycoprotein
超家族 Superfamily superfamily	f.12.1 — Head and neck region of the ectodomain of NDV fusion glycoprotein
家族 Family family	f.12.1.1 — Head and neck region of the ectodomain of NDV fusion glycoprotein

结构域编号 domain_id	d1g5gf2
类 Class class	h — Coiled coil proteins
折叠类型 Fold fold	h.3 — Stalk segment of viral fusion proteins
超家族 Superfamily superfamily	h.3.2 — Virus ectodomain
家族 Family family	h.3.2.1 — Virus ectodomain

CATH v4.4 (18 domains)

结构域编号 domain_id	1g5gA01
类 Class class	2 — Mainly Beta
架构 Architecture architecture	40 — Beta Barrel
拓扑 Topology topology	490 — Head and neck region of the ectodomain of NDV fusion glycoprotein
同源超家族 H-superfamily homologous superfamily	10 — Newcastle disease virus like domain

结构域编号 domain_id	1g5gA02
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily	2480 —

结构域编号 domain_id	1g5gA03
类 Class class	2 — Mainly Beta
架构 Architecture architecture	60 — Sandwich
拓扑 Topology topology	40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily	1690 — Head and neck region of the ectodomain of NDV fusion glycoprotein

结构域编号 domain_id	1g5gB01
类 Class class	2 — Mainly Beta
架构 Architecture architecture	40 — Beta Barrel
拓扑 Topology topology	490 — Head and neck region of the ectodomain of NDV fusion glycoprotein
同源超家族 H-superfamily homologous superfamily	10 — Newcastle disease virus like domain

结构域编号 domain_id	1g5gB02
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily	2480 —

结构域编号 domain_id	1g5gB03
类 Class class	2 — Mainly Beta
架构 Architecture architecture	60 — Sandwich
拓扑 Topology topology	40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily	1690 — Head and neck region of the ectodomain of NDV fusion glycoprotein

结构域编号 domain_id	1g5gC01
类 Class class	2 — Mainly Beta
架构 Architecture architecture	40 — Beta Barrel
拓扑 Topology topology	490 — Head and neck region of the ectodomain of NDV fusion glycoprotein
同源超家族 H-superfamily homologous superfamily	10 — Newcastle disease virus like domain

结构域编号 domain_id	1g5gC02
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily	2480 —

结构域编号 domain_id	1g5gC03
类 Class class	2 — Mainly Beta
架构 Architecture architecture	60 — Sandwich
拓扑 Topology topology	40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily	1690 — Head and neck region of the ectodomain of NDV fusion glycoprotein

结构域编号 domain_id	1g5gD01
类 Class class	2 — Mainly Beta
架构 Architecture architecture	40 — Beta Barrel
拓扑 Topology topology	490 — Head and neck region of the ectodomain of NDV fusion glycoprotein
同源超家族 H-superfamily homologous superfamily	10 — Newcastle disease virus like domain

结构域编号 domain_id	1g5gD02
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily	2480 —

结构域编号 domain_id	1g5gD03
类 Class class	2 — Mainly Beta
架构 Architecture architecture	60 — Sandwich
拓扑 Topology topology	40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily	1690 — Head and neck region of the ectodomain of NDV fusion glycoprotein

结构域编号 domain_id	1g5gE01
类 Class class	2 — Mainly Beta
架构 Architecture architecture	40 — Beta Barrel
拓扑 Topology topology	490 — Head and neck region of the ectodomain of NDV fusion glycoprotein
同源超家族 H-superfamily homologous superfamily	10 — Newcastle disease virus like domain

结构域编号 domain_id	1g5gE02
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily	2480 —

结构域编号 domain_id	1g5gE03
类 Class class	2 — Mainly Beta
架构 Architecture architecture	60 — Sandwich
拓扑 Topology topology	40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily	1690 — Head and neck region of the ectodomain of NDV fusion glycoprotein

结构域编号 domain_id	1g5gF01
类 Class class	2 — Mainly Beta
架构 Architecture architecture	40 — Beta Barrel
拓扑 Topology topology	490 — Head and neck region of the ectodomain of NDV fusion glycoprotein
同源超家族 H-superfamily homologous superfamily	10 — Newcastle disease virus like domain

结构域编号 domain_id	1g5gF02
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily	2480 —

结构域编号 domain_id	1g5gF03
类 Class class	2 — Mainly Beta
架构 Architecture architecture	60 — Sandwich
拓扑 Topology topology	40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily	1690 — Head and neck region of the ectodomain of NDV fusion glycoprotein

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晶胞边长 a length_a	134.390 Å
晶胞边长 b length_b	308.330 Å
晶胞边长 c length_c	243.000 Å
晶胞夹角 α angle_alpha	90.00 °
晶胞夹角 β angle_beta	90.00 °
晶胞夹角 γ angle_gamma	90.00 °
晶胞分子数 Z z_pdb	48

空间群 space_group	C 2 2 21
空间群编号 int_tables_number	20
晶系 crystal_system	—

分辨率 resolution	3.300 Å
最低分辨率 resolution_low	8.000 Å
R 因子 r_factor	—
R_work r_work	0.2240
R_free r_free	0.2730

FRAGMENT OF FUSION PROTEIN FROM NEWCASTLE DISEASE VIRUS

1. 蛋白身份与相关结构 Protein Identity & Related Structures

Fusion glycoprotein F0

当前结构中的状态

数据库中的同蛋白其他状态

2. 结构基本信息 2. Structure Basics

3. Official assembly/model 理论 SAXS Official SAXS Profiles

1g5g__assembly_1__model_1

1g5g__assembly_1__model_1 | I(q)

1g5g__assembly_1__model_1 | P(r) · Pending

4. 晶体学与实验 4. Crystallography & Experiment

晶胞参数 Unit Cell

对称性 Symmetry

精修参数 Refinement

5. 实体与聚合物信息 Entities & Polymers (4)

实体 1 Entity 1 polymer

聚合物 Polymer

来源 Source

实体 2 Entity 2 branched

实体 3 Entity 3 branched

实体 4 Entity 4 non-polymer

6. 折叠分类 (SCOP + CATH) 30 domains

SCOP 2.08 (12 domains)

CATH v4.4 (18 domains)

7. 引用文献 (1)

FRAGMENT OF FUSION PROTEIN FROM NEWCASTLE DISEASE VIRUS

1. 蛋白身份与相关结构 Protein Identity & Related Structures

Fusion glycoprotein F0

当前结构中的状态

数据库中的同蛋白其他状态

单体

同源二聚体

同源四聚体

其他同源多聚体

异源或核酸复合物

2. 结构基本信息 2. Structure Basics

3. Official assembly/model 理论 SAXS Official SAXS Profiles

1g5g__assembly_1__model_1

1g5g__assembly_1__model_1 | I(q)

1g5g__assembly_1__model_1 | P(r) · Pending

4. 晶体学与实验 4. Crystallography & Experiment

晶胞参数 Unit Cell

对称性 Symmetry

精修参数 Refinement

5. 实体与聚合物信息 Entities & Polymers (4)

实体 1 Entity 1 polymer

聚合物 Polymer

来源 Source

实体 2 Entity 2 branched

实体 3 Entity 3 branched

实体 4 Entity 4 non-polymer

6. 折叠分类 (SCOP + CATH) 30 domains

SCOP 2.08 (12 domains)

CATH v4.4 (18 domains)

7. 引用文献 (1)