Escherichia coli
| Assembly | 物理组成 | 蛋白状态 | 分子拷贝数 | 共同组分 | 数据核对 |
|---|---|---|---|---|---|
| 1 | 蛋白–DNA | 同源多聚体 | 蛋白 2 DNA 4 | SITE I OF RES DNA × 1 SITE I OF RES DNA × 2 SITE I OF RES DNA × 1 water × 5 | 与全部聚合物一致 |
| UniProt名称 | TNR1_ECOLI |
| Isoform | — |
| PDB实体 | 4 |
| 链与序列区间 | 作者链 A； PDB构建体 1–183； UniProt 1–183 作者链 B； PDB构建体 1–183； UniProt 1–183 |
页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中；数据库内部编号、导入时间和 assembly 操作表达式仅用于维护，因此不在读者页面展示。
| 条目编号 entry_id | 1gdt |
| 沉积日期 deposition_date | 1995-04-11 |
| 结构标题 title | CRYSTAL STRUCTURE OF A SITE-SPECIFIC RECOMBINASE, GAMMA-DELTA RESOLVASE COMPLEXED WITH A 34 BP CLEAVAGE SITE |
| 关键词 keywords | PROTEIN-DNA COMPLEX, DOUBLE HELIX, OVERHANGING BASE, DNA BINDING PROTEIN-DNA COMPLEX; DNA BINDING PROTEIN/DNA |
| 实验方法 method | X-RAY DIFFRACTION |
页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。
Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
| Rg（Guinier） | 31.92 Å |
| Rg（电子密度） | 31.32 Å |
| 总 Rg | 31.73 Å |
| 原子数 | 4255 |
| 残基数 | 435 |
| 排除体积 | 71297 ų |
| 最大 q | 0.500 Å⁻¹ |
| 结构域编号 domain_id | d1gdta1 |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.4 — DNA/RNA-binding 3-helical bundle |
| 超家族 Superfamily superfamily | a.4.1 — Homeodomain-like |
| 家族 Family family | a.4.1.2 — Recombinase DNA-binding domain |
| 结构域编号 domain_id | d1gdta2 |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.53 — Resolvase-like |
| 超家族 Superfamily superfamily | c.53.1 — Resolvase-like |
| 家族 Family family | c.53.1.1 — gamma,delta resolvase, catalytic domain |
| 结构域编号 domain_id | d1gdtb1 |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.4 — DNA/RNA-binding 3-helical bundle |
| 超家族 Superfamily superfamily | a.4.1 — Homeodomain-like |
| 家族 Family family | a.4.1.2 — Recombinase DNA-binding domain |
| 结构域编号 domain_id | d1gdtb2 |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.53 — Resolvase-like |
| 超家族 Superfamily superfamily | c.53.1 — Resolvase-like |
| 家族 Family family | c.53.1.1 — gamma,delta resolvase, catalytic domain |
| 结构域编号 domain_id | 1gdtA01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 50 — Rossmann fold |
| 同源超家族 H-superfamily homologous superfamily | 1390 — Resolvase, N-terminal catalytic domain |
| 结构域编号 domain_id | 1gdtA02 |
| 类 Class class | 6 — Special |
| 架构 Architecture architecture | 10 — Helix non-globular |
| 拓扑 Topology topology | 250 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces |
| 同源超家族 H-superfamily homologous superfamily | 10 — |
| 结构域编号 domain_id | 1gdtA03 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 10 — Arc Repressor Mutant, subunit A |
| 同源超家族 H-superfamily homologous superfamily | 60 — Homeodomain-like |
| 结构域编号 domain_id | 1gdtB01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 50 — Rossmann fold |
| 同源超家族 H-superfamily homologous superfamily | 1390 — Resolvase, N-terminal catalytic domain |
| 结构域编号 domain_id | 1gdtB02 |
| 类 Class class | 6 — Special |
| 架构 Architecture architecture | 10 — Helix non-globular |
| 拓扑 Topology topology | 250 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces |
| 同源超家族 H-superfamily homologous superfamily | 10 — |
| 结构域编号 domain_id | 1gdtB03 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 10 — Arc Repressor Mutant, subunit A |
| 同源超家族 H-superfamily homologous superfamily | 60 — Homeodomain-like |