1gku

Reverse gyrase from Archaeoglobus fulgidus

Method: X-RAY DIFFRACTION

1. Protein Identity and Related Structures Protein Identity & Related Structures

REVERSE GYRASE

ARCHAEOGLOBUS FULGIDUS

UniProt O29238

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein monomer Monomer Protein 1 water × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name O29238
Isoform
PDB entities 1
Chains and sequence ranges Author chain B; PDBConstruct 33–1054; UniProt 33–1054

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

2. Structure Basics 2. Structure Basics

Entry ID entry_id1gku
Deposition date deposition_date2001-08-21
Structure title titleReverse gyrase from Archaeoglobus fulgidus
Keywords keywordsTOPOISOMERASE, DNA SUPERCOILING, ARCHAEA, HELICASE; TOPOISOMERASE
Experimental Method methodX-RAY DIFFRACTION

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

1gku__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

1gku__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

1gku__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)36.08 Å
Rg (electron density)35.70 Å
Total Rg36.08 Å
Atom count8151
Residues1011
Excluded volume145930 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 1gku__assembly_1__model_1 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download

4. Crystallography and Experiment 4. Crystallography & Experiment

5. Entities and Polymers Entities & Polymers (2)

6. Fold Classification (SCOP + CATH) 12 domains

SCOP 2.08 (4 domains)

Domain ID domain_idd1gkub1
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
Superfamily Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
Family Family familyc.37.1.16 — Helicase-like domain of reverse gyrase
Domain ID domain_idd1gkub2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
Superfamily Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
Family Family familyc.37.1.16 — Helicase-like domain of reverse gyrase
Domain ID domain_idd1gkub3
Class classe — Multi-domain proteins (alpha and beta)
Fold Fold folde.10 — Prokaryotic type I DNA topoisomerase
Superfamily Superfamily superfamilye.10.1 — Prokaryotic type I DNA topoisomerase
Family Family familye.10.1.1 — Prokaryotic type I DNA topoisomerase
Domain ID domain_idd1gkub4
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags

CATH v4.4 (8 domains)

Domain ID domain_id1gkuB01
Class class2 — Mainly Beta
Architecture architecture20 — Single Sheet
Topology topology20 — Anthopleurin-A
Homologous superfamily homologous superfamily30 — reverse gyrase domain
Domain ID domain_id1gkuB02
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
Domain ID domain_id1gkuB03
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
Domain ID domain_id1gkuB04
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology56 — Phenylalanyl-tRNA Synthetase; Chain B, domain 1
Homologous superfamily homologous superfamily120
Domain ID domain_id1gkuB05
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily140
Domain ID domain_id1gkuB06
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology460 — Topoisomerase I; domain 2
Homologous superfamily homologous superfamily10 — Topoisomerase I, domain 2
Domain ID domain_id1gkuB07
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology510 — EV matrix protein fold
Homologous superfamily homologous superfamily20
Domain ID domain_id1gkuB08
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology290 — Topoisomerase I; domain 4
Homologous superfamily homologous superfamily10 — Topoisomerase I, domain 4

7. Citations (1)