1h2i
Human Rad52 protein, N-terminal domain
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 1h2i |
| 沉积日期 deposition_date | 2002-08-09 |
| 结构标题 title | Human Rad52 protein, N-terminal domain |
| 关键词 keywords | DNA-BINDING PROTEIN, DNA REPAIR, DNA RECOMBINATION, DNA BINDING PROTEIN; DNA BINDING PROTEIN |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 67.75 Å |
| 回转半径 Rg (电子) rg_electron | 68.27 Å |
| 零角强度 I(0) i0 | 3125050000.00 |
| 分子量 molecular_weight | 459950.0 kDa |
| 排除体积 excluded_volume | 571490 ų |
| 包络体积 envelope_volume | 860650 ų |
| 水化壳体积 shell_volume | 107890 ų |
| 包络直径 envelope_diameter | 234.4 Å |
| 壳层 Rg shell_rg | 62.57 Å |
| 包络 Rg envelope_rg | 67.28 Å |
| 形状 Rg shape_rg | 68.24 Å |
| 总 Rg total_rg | 68.27 Å |
| 总原子数 total_atoms | 32318 |
| 残基数 n_residues | 4092 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 212.3 Å |
| Rg (实空间) rg_real | 68.10 Å |
| Rg 误差 (实空间) rg_real_error | 1.78 Å |
| I(0) (实空间) i0_real | 3.1250e+09 |
| I(0) 误差 (实空间) i0_real_error | 6.6560e+07 |
| Rg (倒空间) rg_reciprocal | 66.37 Å |
| I(0) (倒空间) i0_reciprocal | 3115000000.0000 |
| 解质量估计 total_estimate | 0.5644 |
| 解质量评级 solution_quality | REASONABLE a REASONABLE solution |
| P(r) 峰数 n_peaks | 3 |
| 主峰位置 r_peak_primary | 55.4 Å |
| 偏度 Skewness skewness | 0.463 |
| 峰度 Kurtosis kurtosis | -0.657 |
| 角度范围 angular_range | — – 0.1150 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 123300000.0000 |
| 实空间数据点数 n_real_points | 24 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.764; Stabil: 1.000; Sysdev: 0.038; Positv: 1.000; Valcen: 0.927; Smooth: 0.001 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (2)
6. 折叠分类 (SCOP + CATH) 44 domains
SCOP 2.08 (22 domains)
| 结构域编号 domain_id | d1h2ia_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.50 — dsRBD-like |
| 超家族 Superfamily superfamily | d.50.1 — dsRNA-binding domain-like |
| 家族 Family family | d.50.1.3 — The homologous-pairing domain of Rad52 recombinase |
| 结构域编号 domain_id | d1h2ib_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.50 — dsRBD-like |
| 超家族 Superfamily superfamily | d.50.1 — dsRNA-binding domain-like |
| 家族 Family family | d.50.1.3 — The homologous-pairing domain of Rad52 recombinase |
| 结构域编号 domain_id | d1h2ic_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.50 — dsRBD-like |
| 超家族 Superfamily superfamily | d.50.1 — dsRNA-binding domain-like |
| 家族 Family family | d.50.1.3 — The homologous-pairing domain of Rad52 recombinase |
| 结构域编号 domain_id | d1h2id_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.50 — dsRBD-like |
| 超家族 Superfamily superfamily | d.50.1 — dsRNA-binding domain-like |
| 家族 Family family | d.50.1.3 — The homologous-pairing domain of Rad52 recombinase |
| 结构域编号 domain_id | d1h2ie_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.50 — dsRBD-like |
| 超家族 Superfamily superfamily | d.50.1 — dsRNA-binding domain-like |
| 家族 Family family | d.50.1.3 — The homologous-pairing domain of Rad52 recombinase |
| 结构域编号 domain_id | d1h2if_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.50 — dsRBD-like |
| 超家族 Superfamily superfamily | d.50.1 — dsRNA-binding domain-like |
| 家族 Family family | d.50.1.3 — The homologous-pairing domain of Rad52 recombinase |
| 结构域编号 domain_id | d1h2ig_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.50 — dsRBD-like |
| 超家族 Superfamily superfamily | d.50.1 — dsRNA-binding domain-like |
| 家族 Family family | d.50.1.3 — The homologous-pairing domain of Rad52 recombinase |
| 结构域编号 domain_id | d1h2ih_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.50 — dsRBD-like |
| 超家族 Superfamily superfamily | d.50.1 — dsRNA-binding domain-like |
| 家族 Family family | d.50.1.3 — The homologous-pairing domain of Rad52 recombinase |
| 结构域编号 domain_id | d1h2ii_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.50 — dsRBD-like |
| 超家族 Superfamily superfamily | d.50.1 — dsRNA-binding domain-like |
| 家族 Family family | d.50.1.3 — The homologous-pairing domain of Rad52 recombinase |
| 结构域编号 domain_id | d1h2ij_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.50 — dsRBD-like |
| 超家族 Superfamily superfamily | d.50.1 — dsRNA-binding domain-like |
| 家族 Family family | d.50.1.3 — The homologous-pairing domain of Rad52 recombinase |
| 结构域编号 domain_id | d1h2ik_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.50 — dsRBD-like |
| 超家族 Superfamily superfamily | d.50.1 — dsRNA-binding domain-like |
| 家族 Family family | d.50.1.3 — The homologous-pairing domain of Rad52 recombinase |
| 结构域编号 domain_id | d1h2il_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.50 — dsRBD-like |
| 超家族 Superfamily superfamily | d.50.1 — dsRNA-binding domain-like |
| 家族 Family family | d.50.1.3 — The homologous-pairing domain of Rad52 recombinase |
| 结构域编号 domain_id | d1h2im_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.50 — dsRBD-like |
| 超家族 Superfamily superfamily | d.50.1 — dsRNA-binding domain-like |
| 家族 Family family | d.50.1.3 — The homologous-pairing domain of Rad52 recombinase |
| 结构域编号 domain_id | d1h2in_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.50 — dsRBD-like |
| 超家族 Superfamily superfamily | d.50.1 — dsRNA-binding domain-like |
| 家族 Family family | d.50.1.3 — The homologous-pairing domain of Rad52 recombinase |
| 结构域编号 domain_id | d1h2io_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.50 — dsRBD-like |
| 超家族 Superfamily superfamily | d.50.1 — dsRNA-binding domain-like |
| 家族 Family family | d.50.1.3 — The homologous-pairing domain of Rad52 recombinase |
| 结构域编号 domain_id | d1h2ip_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.50 — dsRBD-like |
| 超家族 Superfamily superfamily | d.50.1 — dsRNA-binding domain-like |
| 家族 Family family | d.50.1.3 — The homologous-pairing domain of Rad52 recombinase |
| 结构域编号 domain_id | d1h2iq_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.50 — dsRBD-like |
| 超家族 Superfamily superfamily | d.50.1 — dsRNA-binding domain-like |
| 家族 Family family | d.50.1.3 — The homologous-pairing domain of Rad52 recombinase |
| 结构域编号 domain_id | d1h2ir_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.50 — dsRBD-like |
| 超家族 Superfamily superfamily | d.50.1 — dsRNA-binding domain-like |
| 家族 Family family | d.50.1.3 — The homologous-pairing domain of Rad52 recombinase |
| 结构域编号 domain_id | d1h2is_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.50 — dsRBD-like |
| 超家族 Superfamily superfamily | d.50.1 — dsRNA-binding domain-like |
| 家族 Family family | d.50.1.3 — The homologous-pairing domain of Rad52 recombinase |
| 结构域编号 domain_id | d1h2it_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.50 — dsRBD-like |
| 超家族 Superfamily superfamily | d.50.1 — dsRNA-binding domain-like |
| 家族 Family family | d.50.1.3 — The homologous-pairing domain of Rad52 recombinase |
| 结构域编号 domain_id | d1h2iu_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.50 — dsRBD-like |
| 超家族 Superfamily superfamily | d.50.1 — dsRNA-binding domain-like |
| 家族 Family family | d.50.1.3 — The homologous-pairing domain of Rad52 recombinase |
| 结构域编号 domain_id | d1h2iv_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.50 — dsRBD-like |
| 超家族 Superfamily superfamily | d.50.1 — dsRNA-binding domain-like |
| 家族 Family family | d.50.1.3 — The homologous-pairing domain of Rad52 recombinase |
CATH v4.4 (22 domains)
| 结构域编号 domain_id | 1h2iA01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 390 — Enolase-like; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 80 — DNA repair protein Rad52/59/22 |
| 结构域编号 domain_id | 1h2iB01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 390 — Enolase-like; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 80 — DNA repair protein Rad52/59/22 |
| 结构域编号 domain_id | 1h2iC01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 390 — Enolase-like; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 80 — DNA repair protein Rad52/59/22 |
| 结构域编号 domain_id | 1h2iD01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 390 — Enolase-like; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 80 — DNA repair protein Rad52/59/22 |
| 结构域编号 domain_id | 1h2iE01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 390 — Enolase-like; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 80 — DNA repair protein Rad52/59/22 |
| 结构域编号 domain_id | 1h2iF01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 390 — Enolase-like; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 80 — DNA repair protein Rad52/59/22 |
| 结构域编号 domain_id | 1h2iG01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 390 — Enolase-like; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 80 — DNA repair protein Rad52/59/22 |
| 结构域编号 domain_id | 1h2iH01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 390 — Enolase-like; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 80 — DNA repair protein Rad52/59/22 |
| 结构域编号 domain_id | 1h2iI01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 390 — Enolase-like; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 80 — DNA repair protein Rad52/59/22 |
| 结构域编号 domain_id | 1h2iJ01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 390 — Enolase-like; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 80 — DNA repair protein Rad52/59/22 |
| 结构域编号 domain_id | 1h2iK01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 390 — Enolase-like; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 80 — DNA repair protein Rad52/59/22 |
| 结构域编号 domain_id | 1h2iL01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 390 — Enolase-like; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 80 — DNA repair protein Rad52/59/22 |
| 结构域编号 domain_id | 1h2iM01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 390 — Enolase-like; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 80 — DNA repair protein Rad52/59/22 |
| 结构域编号 domain_id | 1h2iN01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 390 — Enolase-like; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 80 — DNA repair protein Rad52/59/22 |
| 结构域编号 domain_id | 1h2iO01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 390 — Enolase-like; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 80 — DNA repair protein Rad52/59/22 |
| 结构域编号 domain_id | 1h2iP01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 390 — Enolase-like; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 80 — DNA repair protein Rad52/59/22 |
| 结构域编号 domain_id | 1h2iQ01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 390 — Enolase-like; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 80 — DNA repair protein Rad52/59/22 |
| 结构域编号 domain_id | 1h2iR01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 390 — Enolase-like; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 80 — DNA repair protein Rad52/59/22 |
| 结构域编号 domain_id | 1h2iS01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 390 — Enolase-like; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 80 — DNA repair protein Rad52/59/22 |
| 结构域编号 domain_id | 1h2iT01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 390 — Enolase-like; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 80 — DNA repair protein Rad52/59/22 |
| 结构域编号 domain_id | 1h2iU01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 390 — Enolase-like; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 80 — DNA repair protein Rad52/59/22 |
| 结构域编号 domain_id | 1h2iV01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 390 — Enolase-like; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 80 — DNA repair protein Rad52/59/22 |