1hht
RNA dependent RNA polymerase from dsRNA bacteriophage phi6 plus template
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 1hht |
| 沉积日期 deposition_date | 2000-12-28 |
| 结构标题 title | RNA dependent RNA polymerase from dsRNA bacteriophage phi6 plus template |
| 关键词 keywords | RNA POLYMERASE, VIRAL POLYMERASE; RNA POLYMERASE |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 53.69 Å |
| 回转半径 Rg (电子) rg_electron | 54.62 Å |
| 零角强度 I(0) i0 | 780565000.00 |
| 分子量 molecular_weight | 228880.0 kDa |
| 排除体积 excluded_volume | 284820 ų |
| 包络体积 envelope_volume | 379380 ų |
| 水化壳体积 shell_volume | 64739 ų |
| 包络直径 envelope_diameter | 192.9 Å |
| 壳层 Rg shell_rg | 48.89 Å |
| 包络 Rg envelope_rg | 53.86 Å |
| 形状 Rg shape_rg | 54.62 Å |
| 总 Rg total_rg | 54.43 Å |
| 总原子数 total_atoms | 16083 |
| 残基数 n_residues | 2007 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 180.8 Å |
| Rg (实空间) rg_real | 54.37 Å |
| Rg 误差 (实空间) rg_real_error | 2.57 Å |
| I(0) (实空间) i0_real | 7.8060e+08 |
| I(0) 误差 (实空间) i0_real_error | 1.7110e+07 |
| Rg (倒空间) rg_reciprocal | 53.10 Å |
| I(0) (倒空间) i0_reciprocal | 779100000.0000 |
| 解质量估计 total_estimate | 0.7271 |
| 解质量评级 solution_quality | REASONABLE a REASONABLE solution |
| P(r) 峰数 n_peaks | 2 |
| 主峰位置 r_peak_primary | 37.4 Å |
| 偏度 Skewness skewness | 0.601 |
| 峰度 Kurtosis kurtosis | -0.449 |
| 角度范围 angular_range | — – 0.1450 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 122700000.0000 |
| 实空间数据点数 n_real_points | 30 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.570; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.660; Smooth: 0.078 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (3)
6. 折叠分类 (SCOP + CATH) 12 domains
SCOP 2.08 (3 domains)
| 结构域编号 domain_id | d1hhtp_ |
| 类 Class class | e — Multi-domain proteins (alpha and beta) |
| 折叠类型 Fold fold | e.8 — DNA/RNA polymerases |
| 超家族 Superfamily superfamily | e.8.1 — DNA/RNA polymerases |
| 家族 Family family | e.8.1.6 — dsRNA phage RNA-dependent RNA-polymerase |
| 结构域编号 domain_id | d1hhtq_ |
| 类 Class class | e — Multi-domain proteins (alpha and beta) |
| 折叠类型 Fold fold | e.8 — DNA/RNA polymerases |
| 超家族 Superfamily superfamily | e.8.1 — DNA/RNA polymerases |
| 家族 Family family | e.8.1.6 — dsRNA phage RNA-dependent RNA-polymerase |
| 结构域编号 domain_id | d1hhtr_ |
| 类 Class class | e — Multi-domain proteins (alpha and beta) |
| 折叠类型 Fold fold | e.8 — DNA/RNA polymerases |
| 超家族 Superfamily superfamily | e.8.1 — DNA/RNA polymerases |
| 家族 Family family | e.8.1.6 — dsRNA phage RNA-dependent RNA-polymerase |
CATH v4.4 (9 domains)
| 结构域编号 domain_id | 1hhtP02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 490 — Globin-like |
| 同源超家族 H-superfamily homologous superfamily | 60 — Phage p2 RNA dependent RNA polymerase domain |
| 结构域编号 domain_id | 1hhtP03 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 1600 — |
| 结构域编号 domain_id | 1hhtP04 |
| 类 Class class | 6 — Special |
| 架构 Architecture architecture | 20 — Other non-globular |
| 拓扑 Topology topology | 410 — Dihydrolipoamide Transferase |
| 同源超家族 H-superfamily homologous superfamily | 10 — |
| 结构域编号 domain_id | 1hhtQ02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 490 — Globin-like |
| 同源超家族 H-superfamily homologous superfamily | 60 — Phage p2 RNA dependent RNA polymerase domain |
| 结构域编号 domain_id | 1hhtQ03 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 1600 — |
| 结构域编号 domain_id | 1hhtQ04 |
| 类 Class class | 6 — Special |
| 架构 Architecture architecture | 20 — Other non-globular |
| 拓扑 Topology topology | 410 — Dihydrolipoamide Transferase |
| 同源超家族 H-superfamily homologous superfamily | 10 — |
| 结构域编号 domain_id | 1hhtR02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 490 — Globin-like |
| 同源超家族 H-superfamily homologous superfamily | 60 — Phage p2 RNA dependent RNA polymerase domain |
| 结构域编号 domain_id | 1hhtR03 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 1600 — |
| 结构域编号 domain_id | 1hhtR04 |
| 类 Class class | 6 — Special |
| 架构 Architecture architecture | 20 — Other non-globular |
| 拓扑 Topology topology | 410 — Dihydrolipoamide Transferase |
| 同源超家族 H-superfamily homologous superfamily | 10 — |