1hqz

Cofilin homology domain of a yeast actin-binding protein ABP1P

Method: X-RAY DIFFRACTION D_max: 134.8 Å Quality: GOOD

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

下载 Download SAXS (.dat) P(r) (.pr.out) CIF

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1. 结构基本信息 1. Structure Basics

条目编号 entry_id	1hqz
沉积日期 deposition_date	2000-12-20
结构标题 title	Cofilin homology domain of a yeast actin-binding protein ABP1P
关键词 keywords	;cofilin homology domain, actin binding, New York SGX Research Center for Structural Genomics, NYSGXRC, Structural Genomics, PSI, Protein Structure Initiative, structural protein ;; STRUCTURAL PROTEIN
实验方法 method	X-RAY DIFFRACTION

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2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier	39.11 Å
回转半径 Rg (电子) rg_electron	38.83 Å
零角强度 I(0) i0	282629000.00
分子量 molecular_weight	136690.0 kDa
排除体积 excluded_volume	170870 Å³
包络体积 envelope_volume	223840 Å³
水化壳体积 shell_volume	49706 Å³
包络直径 envelope_diameter	140.4 Å
壳层 Rg shell_rg	42.94 Å
包络 Rg envelope_rg	38.45 Å
形状 Rg shape_rg	38.82 Å
总 Rg total_rg	39.14 Å
总原子数 total_atoms	9662
残基数 n_residues	1226
球谐函数阶数 n_harmonics	20
q 范围 q_range	— – 0.5000 Å⁻¹
数据点数 n_points	101
壳层类型 shell_type	directional
溶剂电子密度 solvent_density	0.3340 e/Å³
壳层衬度 contrast_shell	0.0300 e/Å³
CRYSOL 版本 crysol_version	4.1.3

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3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax	134.8 Å
Rg (实空间) rg_real	39.24 Å
Rg 误差 (实空间) rg_real_error	1.14 Å
I(0) (实空间) i0_real	2.8260e+08
I(0) 误差 (实空间) i0_real_error	5.1770e+06
Rg (倒空间) rg_reciprocal	39.17 Å
I(0) (倒空间) i0_reciprocal	282600000.0000
解质量估计 total_estimate	0.8693
解质量评级 solution_quality	GOOD a GOOD solution
P(r) 峰数 n_peaks	1
主峰位置 r_peak_primary	47.2 Å
偏度 Skewness skewness	0.406
峰度 Kurtosis kurtosis	-0.282
角度范围 angular_range	— – 0.2000 Å⁻¹
当前正则化参数 α current_alpha	0.0000
最高正则化参数 α highest_alpha	51850000.0000
实空间数据点数 n_real_points	41
GNOM 版本 gnom_version	4.1.3
质量判据 quality_criteria	AN1: 0.000; Oscil: 0.840; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.947; Smooth: 0.830

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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合体信息 (2)

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6. 折叠分类 (SCOP + CATH) 18 domains

SCOP 2.08 (9 domains)

结构域编号 domain_id	d1hqz1_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.109 — Gelsolin-like
超家族 Superfamily superfamily	d.109.1 — Actin depolymerizing proteins
家族 Family family	d.109.1.2 — Cofilin-like

结构域编号 domain_id	d1hqz2_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.109 — Gelsolin-like
超家族 Superfamily superfamily	d.109.1 — Actin depolymerizing proteins
家族 Family family	d.109.1.2 — Cofilin-like

结构域编号 domain_id	d1hqz3_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.109 — Gelsolin-like
超家族 Superfamily superfamily	d.109.1 — Actin depolymerizing proteins
家族 Family family	d.109.1.2 — Cofilin-like

结构域编号 domain_id	d1hqz4_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.109 — Gelsolin-like
超家族 Superfamily superfamily	d.109.1 — Actin depolymerizing proteins
家族 Family family	d.109.1.2 — Cofilin-like

结构域编号 domain_id	d1hqz5_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.109 — Gelsolin-like
超家族 Superfamily superfamily	d.109.1 — Actin depolymerizing proteins
家族 Family family	d.109.1.2 — Cofilin-like

结构域编号 domain_id	d1hqz6_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.109 — Gelsolin-like
超家族 Superfamily superfamily	d.109.1 — Actin depolymerizing proteins
家族 Family family	d.109.1.2 — Cofilin-like

结构域编号 domain_id	d1hqz7_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.109 — Gelsolin-like
超家族 Superfamily superfamily	d.109.1 — Actin depolymerizing proteins
家族 Family family	d.109.1.2 — Cofilin-like

结构域编号 domain_id	d1hqz8_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.109 — Gelsolin-like
超家族 Superfamily superfamily	d.109.1 — Actin depolymerizing proteins
家族 Family family	d.109.1.2 — Cofilin-like

结构域编号 domain_id	d1hqz9_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.109 — Gelsolin-like
超家族 Superfamily superfamily	d.109.1 — Actin depolymerizing proteins
家族 Family family	d.109.1.2 — Cofilin-like

CATH v4.4 (9 domains)

结构域编号 domain_id	1hqz100
类 Class class	3 — Alpha Beta
架构 Architecture architecture	40 — 3-Layer(aba) Sandwich
拓扑 Topology topology	20 — Severin
同源超家族 H-superfamily homologous superfamily	10 — Severin

结构域编号 domain_id	1hqz200
类 Class class	3 — Alpha Beta
架构 Architecture architecture	40 — 3-Layer(aba) Sandwich
拓扑 Topology topology	20 — Severin
同源超家族 H-superfamily homologous superfamily	10 — Severin

结构域编号 domain_id	1hqz300
类 Class class	3 — Alpha Beta
架构 Architecture architecture	40 — 3-Layer(aba) Sandwich
拓扑 Topology topology	20 — Severin
同源超家族 H-superfamily homologous superfamily	10 — Severin

结构域编号 domain_id	1hqz400
类 Class class	3 — Alpha Beta
架构 Architecture architecture	40 — 3-Layer(aba) Sandwich
拓扑 Topology topology	20 — Severin
同源超家族 H-superfamily homologous superfamily	10 — Severin

结构域编号 domain_id	1hqz500
类 Class class	3 — Alpha Beta
架构 Architecture architecture	40 — 3-Layer(aba) Sandwich
拓扑 Topology topology	20 — Severin
同源超家族 H-superfamily homologous superfamily	10 — Severin

结构域编号 domain_id	1hqz600
类 Class class	3 — Alpha Beta
架构 Architecture architecture	40 — 3-Layer(aba) Sandwich
拓扑 Topology topology	20 — Severin
同源超家族 H-superfamily homologous superfamily	10 — Severin

结构域编号 domain_id	1hqz700
类 Class class	3 — Alpha Beta
架构 Architecture architecture	40 — 3-Layer(aba) Sandwich
拓扑 Topology topology	20 — Severin
同源超家族 H-superfamily homologous superfamily	10 — Severin

结构域编号 domain_id	1hqz800
类 Class class	3 — Alpha Beta
架构 Architecture architecture	40 — 3-Layer(aba) Sandwich
拓扑 Topology topology	20 — Severin
同源超家族 H-superfamily homologous superfamily	10 — Severin

结构域编号 domain_id	1hqz900
类 Class class	3 — Alpha Beta
架构 Architecture architecture	40 — 3-Layer(aba) Sandwich
拓扑 Topology topology	20 — Severin
同源超家族 H-superfamily homologous superfamily	10 — Severin

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7. 引用文献 (4)

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晶胞边长 a length_a	156.480 Å
晶胞边长 b length_b	66.680 Å
晶胞边长 c length_c	125.100 Å
晶胞夹角 α angle_alpha	90.00 °
晶胞夹角 β angle_beta	108.26 °
晶胞夹角 γ angle_gamma	90.00 °
晶胞分子数 Z z_pdb	36

空间群 space_group	C 1 2 1
空间群编号 int_tables_number	5
晶系 crystal_system	—

分辨率 resolution	2.100 Å
最低分辨率 resolution_low	15.000 Å
R 因子 r_factor	0.2150
R_work r_work	0.2130
R_free r_free	0.2590

描述 description	ACTIN-BINDING PROTEIN
分子量 formula_weight	15638.4 kDa
来源方法 src_method	man
拷贝数 entity_count	9

聚合体类型 type	polypeptide(L)
链编号 strand_id	1,2,3,4,5,6,7,8,9
原子数 atom_count	10178

Cofilin homology domain of a yeast actin-binding protein ABP1P

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

1. 结构基本信息 1. Structure Basics

2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

4. 晶体学与实验 4. Crystallography & Experiment

晶胞参数 Unit Cell

对称性 Symmetry

精修参数 Refinement

衍射实验 Diffraction

5. 实体与聚合体信息 (2)

Entity 1 polymer

聚合体 Polymer

来源 Source

Entity 2 water

6. 折叠分类 (SCOP + CATH) 18 domains

SCOP 2.08 (9 domains)

CATH v4.4 (9 domains)

7. 引用文献 (4)

8. 文件与曲线 (10)

Files (7)

Curves (3)

来源生物 organism	Saccharomyces cerevisiae
通用名 common_name	;baker's yeast ;
NCBI 分类编号 ncbi_taxonomy_id	4932
宿主生物 host_organism	Escherichia coli

描述 description	water
分子量 formula_weight	18.0 kDa
来源方法 src_method	nat
拷贝数 entity_count	516

fit	/app/data/saxs_computation/hq/1hqz/1hqz.fit
pddf	/app/data/pr_computation/hq/1hqz/1hqz.pr.out
profile	/app/data/saxs_computation/hq/1hqz/1hqz.dat