1idh

THE NMR SOLUTION STRUCTURE OF THE COMPLEX FORMED BETWEEN ALPHA-BUNGAROTOXIN AND AN 18MER COGNATE PEPTIDE

Method: SOLUTION NMR Dmax: 53.3 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

ALPHA-BUNGAROTOXIN

OrganismNot specified

UniProt P60615

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 1–74 Not recorded ACETYLCHOLINE RECEPTOR PROTEIN, ALPHA CHAIN × 1 (P02710) SOLUTION NMR NMR measurement conditions:pH 4;308 K;Pressure ambient NMR sample composition:2.1 mM alpha-Bungarotoxin/alpha18mer complex, alpha18mer is 15N labeled, 50 mM perdeuterated potassium acetate buffer (pH 4.0) with 5% D2O and 0.05% sodium azide | 95% H2O/5% D2O Resolution not provided

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

24 other PDB entries and 25 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name NXL1A_BUNMU
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–74; UniProt 1–74

ACETYLCHOLINE RECEPTOR PROTEIN, ALPHA CHAIN

Torpedo californica

UniProt P02710

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain B; UniProt 205–222 Non-standard monomer:Yes (specific site not provided by mmCIF) ALPHA-BUNGAROTOXIN × 1 (P60615) SOLUTION NMR NMR measurement conditions:pH 4;308 K;Pressure ambient NMR sample composition:2.1 mM alpha-Bungarotoxin/alpha18mer complex, alpha18mer is 15N labeled, 50 mM perdeuterated potassium acetate buffer (pH 4.0) with 5% D2O and 0.05% sodium azide | 95% H2O/5% D2O Resolution not provided

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

28 other PDB entries and 28 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ACHA_TORCA
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–18; UniProt 205–222

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1idh

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1idh
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1idh
Deposition date deposition_date2001-04-04
Structure title titleTHE NMR SOLUTION STRUCTURE OF THE COMPLEX FORMED BETWEEN ALPHA-BUNGAROTOXIN AND AN 18MER COGNATE PEPTIDE
Keywords keywordsALPHA-BUNGAROTOXIN, NICOTINIC ACETYLCHOLINE RECEPTOR, ALPHA 1 SUBUNIT, PROTEIN-PROTEIN INTERACTION, CATION-PI INTERACTION, TOXIN; TOXIN
Experimental Method methodSOLUTION NMR

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier14.16
Radius of gyration Rg (electron density) rg_electron14.69
Forward intensity I(0) i0658163000.00
Molecular weight molecular_weight206400.0 kDa
Excluded volume excluded_volume253530 ų
Envelope volume envelope_volume31076 ų
Hydration-shell volume shell_volume15452 ų
Envelope diameter envelope_diameter59.7
Shell Rg shell_rg23.37
Envelope Rg envelope_rg18.01
Shape Rg shape_rg14.75
Total Rg total_rg14.65
Total atoms total_atoms27880
Residues n_residues1840
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax53.3
Rg (real space) rg_real14.21
Rg uncertainty (real space) rg_real_error0.50
I(0) (real space) i0_real6.5820e+08
I(0) uncertainty (real space) i0_real_error8.2960e+06
Rg (reciprocal space) rg_reciprocal14.21
I(0) (reciprocal space) i0_reciprocal658200000.0000
Solution quality estimate total_estimate0.8248
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary15.5
Skewness Skewness skewness0.417
Kurtosis Kurtosis kurtosis-0.107
Angular range angular_range— – 0.5000 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha317600.0000
Real-space data points n_real_points80
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.691; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.659; Smooth: 0.987

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (2)

7. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd1idha_
Class classg — Small proteins
Fold Fold foldg.7 — Snake toxin-like
Superfamily Superfamily superfamilyg.7.1 — Snake toxin-like
Family Family familyg.7.1.1 — Snake venom toxins

CATH v4.4 (1 domains)

Domain ID domain_id1idhA00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology60 — CD59
Homologous superfamily homologous superfamily10 — CD59

8. Citations (1)

9. Files and Curves (10)