1is8

Crystal structure of rat GTPCHI/GFRP stimulatory complex plus Zn

Method: X-RAY DIFFRACTION Dmax: 132.4 Å Quality: GOOD

SAXS 散射曲线 SAXS Profile

SAXS profile for 1is8

P(r) 距离分布 P(r) Distribution

P(r) distribution for 1is8
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1. 结构基本信息 1. Structure Basics

条目编号 entry_id1is8
沉积日期 deposition_date2001-11-18
结构标题 titleCrystal structure of rat GTPCHI/GFRP stimulatory complex plus Zn
关键词 keywordsENZYME-REGULATORY PROTEIN COMPLEX, HYDROLASE-PROTEIN BINDING COMPLEX; HYDROLASE/PROTEIN BINDING
实验方法 methodX-RAY DIFFRACTION

2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier43.11
回转半径 Rg (电子) rg_electron42.37
零角强度 I(0) i01467410000.00
分子量 molecular_weight317010.0 kDa
排除体积 excluded_volume396970 ų
包络体积 envelope_volume499000 ų
水化壳体积 shell_volume93371 ų
包络直径 envelope_diameter140.4
壳层 Rg shell_rg51.05
包络 Rg envelope_rg41.72
形状 Rg shape_rg42.40
总 Rg total_rg42.60
总原子数 total_atoms22140
残基数 n_residues2760
球谐函数阶数 n_harmonics20
q 范围 q_range— – 0.5000 −1
数据点数 n_points101
壳层类型 shell_typedirectional
溶剂电子密度 solvent_density0.3340 e/ų
壳层衬度 contrast_shell0.0300 e/ų
CRYSOL 版本 crysol_version4.1.3

3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax132.4
Rg (实空间) rg_real42.91
Rg 误差 (实空间) rg_real_error0.66
I(0) (实空间) i0_real1.4670e+09
I(0) 误差 (实空间) i0_real_error2.2780e+07
Rg (倒空间) rg_reciprocal43.11
I(0) (倒空间) i0_reciprocal1468000000.0000
解质量估计 total_estimate0.8638
解质量评级 solution_quality GOOD a GOOD solution
P(r) 峰数 n_peaks2
主峰位置 r_peak_primary57.3
偏度 Skewness skewness0.235
峰度 Kurtosis kurtosis-0.188
角度范围 angular_range— – 0.1850 −1
当前正则化参数 α current_alpha0.0000
最高正则化参数 α highest_alpha420500000.0000
实空间数据点数 n_real_points38
GNOM 版本 gnom_version4.1.3
质量判据 quality_criteria AN1: 0.000; Oscil: 0.886; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.957; Smooth: 0.610

4. 晶体学与实验 4. Crystallography & Experiment

5. 实体与聚合体信息 (6)

6. 折叠分类 (SCOP + CATH) 50 domains

SCOP 2.08 (20 domains)

结构域编号 domain_idd1is8a_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.96 — T-fold
超家族 Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
家族 Family familyd.96.1.1 — GTP cyclohydrolase I
结构域编号 domain_idd1is8b_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.96 — T-fold
超家族 Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
家族 Family familyd.96.1.1 — GTP cyclohydrolase I
结构域编号 domain_idd1is8c_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.96 — T-fold
超家族 Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
家族 Family familyd.96.1.1 — GTP cyclohydrolase I
结构域编号 domain_idd1is8d_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.96 — T-fold
超家族 Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
家族 Family familyd.96.1.1 — GTP cyclohydrolase I
结构域编号 domain_idd1is8e_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.96 — T-fold
超家族 Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
家族 Family familyd.96.1.1 — GTP cyclohydrolase I
结构域编号 domain_idd1is8f_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.96 — T-fold
超家族 Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
家族 Family familyd.96.1.1 — GTP cyclohydrolase I
结构域编号 domain_idd1is8g_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.96 — T-fold
超家族 Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
家族 Family familyd.96.1.1 — GTP cyclohydrolase I
结构域编号 domain_idd1is8h_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.96 — T-fold
超家族 Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
家族 Family familyd.96.1.1 — GTP cyclohydrolase I
结构域编号 domain_idd1is8i_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.96 — T-fold
超家族 Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
家族 Family familyd.96.1.1 — GTP cyclohydrolase I
结构域编号 domain_idd1is8j_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.96 — T-fold
超家族 Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
家族 Family familyd.96.1.1 — GTP cyclohydrolase I
结构域编号 domain_idd1is8k_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.205 — GTP cyclohydrolase I feedback regulatory protein, GFRP
超家族 Superfamily superfamilyd.205.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
家族 Family familyd.205.1.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
结构域编号 domain_idd1is8l_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.205 — GTP cyclohydrolase I feedback regulatory protein, GFRP
超家族 Superfamily superfamilyd.205.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
家族 Family familyd.205.1.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
结构域编号 domain_idd1is8m_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.205 — GTP cyclohydrolase I feedback regulatory protein, GFRP
超家族 Superfamily superfamilyd.205.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
家族 Family familyd.205.1.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
结构域编号 domain_idd1is8n_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.205 — GTP cyclohydrolase I feedback regulatory protein, GFRP
超家族 Superfamily superfamilyd.205.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
家族 Family familyd.205.1.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
结构域编号 domain_idd1is8o_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.205 — GTP cyclohydrolase I feedback regulatory protein, GFRP
超家族 Superfamily superfamilyd.205.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
家族 Family familyd.205.1.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
结构域编号 domain_idd1is8p_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.205 — GTP cyclohydrolase I feedback regulatory protein, GFRP
超家族 Superfamily superfamilyd.205.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
家族 Family familyd.205.1.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
结构域编号 domain_idd1is8q_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.205 — GTP cyclohydrolase I feedback regulatory protein, GFRP
超家族 Superfamily superfamilyd.205.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
家族 Family familyd.205.1.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
结构域编号 domain_idd1is8r_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.205 — GTP cyclohydrolase I feedback regulatory protein, GFRP
超家族 Superfamily superfamilyd.205.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
家族 Family familyd.205.1.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
结构域编号 domain_idd1is8s_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.205 — GTP cyclohydrolase I feedback regulatory protein, GFRP
超家族 Superfamily superfamilyd.205.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
家族 Family familyd.205.1.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
结构域编号 domain_idd1is8t_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.205 — GTP cyclohydrolase I feedback regulatory protein, GFRP
超家族 Superfamily superfamilyd.205.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
家族 Family familyd.205.1.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP

CATH v4.4 (30 domains)

结构域编号 domain_id1is8A01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
结构域编号 domain_id1is8A02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1130 — GTP Cyclohydrolase I, domain 2
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
结构域编号 domain_id1is8B01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
结构域编号 domain_id1is8B02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1130 — GTP Cyclohydrolase I, domain 2
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
结构域编号 domain_id1is8C01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
结构域编号 domain_id1is8C02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1130 — GTP Cyclohydrolase I, domain 2
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
结构域编号 domain_id1is8D01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
结构域编号 domain_id1is8D02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1130 — GTP Cyclohydrolase I, domain 2
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
结构域编号 domain_id1is8E01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
结构域编号 domain_id1is8E02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1130 — GTP Cyclohydrolase I, domain 2
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
结构域编号 domain_id1is8F01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
结构域编号 domain_id1is8F02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1130 — GTP Cyclohydrolase I, domain 2
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
结构域编号 domain_id1is8G01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
结构域编号 domain_id1is8G02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1130 — GTP Cyclohydrolase I, domain 2
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
结构域编号 domain_id1is8H01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
结构域编号 domain_id1is8H02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1130 — GTP Cyclohydrolase I, domain 2
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
结构域编号 domain_id1is8I01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
结构域编号 domain_id1is8I02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1130 — GTP Cyclohydrolase I, domain 2
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
结构域编号 domain_id1is8J01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
结构域编号 domain_id1is8J02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1130 — GTP Cyclohydrolase I, domain 2
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
结构域编号 domain_id1is8K00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1410 — Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I feedback regulatory protein GFRP
结构域编号 domain_id1is8L00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1410 — Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I feedback regulatory protein GFRP
结构域编号 domain_id1is8M00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1410 — Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I feedback regulatory protein GFRP
结构域编号 domain_id1is8N00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1410 — Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I feedback regulatory protein GFRP
结构域编号 domain_id1is8O00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1410 — Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I feedback regulatory protein GFRP
结构域编号 domain_id1is8P00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1410 — Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I feedback regulatory protein GFRP
结构域编号 domain_id1is8Q00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1410 — Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I feedback regulatory protein GFRP
结构域编号 domain_id1is8R00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1410 — Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I feedback regulatory protein GFRP
结构域编号 domain_id1is8S00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1410 — Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I feedback regulatory protein GFRP
结构域编号 domain_id1is8T00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1410 — Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K
同源超家族 H-superfamily homologous superfamily10 — GTP cyclohydrolase I feedback regulatory protein GFRP

7. 引用文献 (1)

8. 文件与曲线 (10)