1jdb

CARBAMOYL PHOSPHATE SYNTHETASE FROM ESCHERICHIA COLI

Method: X-RAY DIFFRACTION

▼

1. 蛋白身份与相关结构 Protein Identity & Related Structures

CARBAMOYL PHOSPHATE SYNTHETASE

物种未注明

当前结构中的状态

Assembly	物理组成	蛋白状态	分子拷贝数	共同组分	数据核对
1	蛋白异源复合物	异源复合物	蛋白 8	CARBAMOYL PHOSPHATE SYNTHETASE × 4 （P00907） MANGANESE (II) ION × 16 POTASSIUM ION × 29 PHOSPHATE ION × 9 CHLORIDE ION × 29 GLUTAMINE × 8 ADENOSINE-5'-DIPHOSPHATE × 8 L-ornithine × 4 TETRAETHYLAMMONIUM ION × 4 water × 8	与蛋白数一致
2	蛋白异源复合物	异源复合物	蛋白 2	CARBAMOYL PHOSPHATE SYNTHETASE × 1 （P00907） MANGANESE (II) ION × 4 POTASSIUM ION × 7 PHOSPHATE ION × 2 CHLORIDE ION × 7 GLUTAMINE × 2 ADENOSINE-5'-DIPHOSPHATE × 2 L-ornithine × 1 TETRAETHYLAMMONIUM ION × 1 water × 2	与蛋白数一致
3	蛋白异源复合物	异源复合物	蛋白 2	CARBAMOYL PHOSPHATE SYNTHETASE × 1 （P00907） MANGANESE (II) ION × 4 POTASSIUM ION × 6 PHOSPHATE ION × 2 CHLORIDE ION × 7 GLUTAMINE × 2 ADENOSINE-5'-DIPHOSPHATE × 2 L-ornithine × 1 TETRAETHYLAMMONIUM ION × 1 water × 2	与蛋白数一致
4	蛋白异源复合物	异源复合物	蛋白 2	CARBAMOYL PHOSPHATE SYNTHETASE × 1 （P00907） MANGANESE (II) ION × 4 POTASSIUM ION × 8 PHOSPHATE ION × 3 CHLORIDE ION × 7 GLUTAMINE × 2 ADENOSINE-5'-DIPHOSPHATE × 2 L-ornithine × 1 TETRAETHYLAMMONIUM ION × 1 water × 2	与蛋白数一致
5	蛋白异源复合物	异源复合物	蛋白 2	CARBAMOYL PHOSPHATE SYNTHETASE × 1 （P00907） MANGANESE (II) ION × 4 POTASSIUM ION × 8 PHOSPHATE ION × 2 CHLORIDE ION × 8 GLUTAMINE × 2 ADENOSINE-5'-DIPHOSPHATE × 2 L-ornithine × 1 TETRAETHYLAMMONIUM ION × 1 water × 2	与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据

UniProt名称	CARB_ECOLI
Isoform	—
PDB实体	1
链与序列区间	作者链 B； PDB构建体 2–1073； UniProt 1–1072 作者链 E； PDB构建体 2–1073； UniProt 1–1072 作者链 H； PDB构建体 2–1073； UniProt 1–1072 作者链 K； PDB构建体 2–1073； UniProt 1–1072

CARBAMOYL PHOSPHATE SYNTHETASE

物种未注明

UniProt P00907

当前结构中的状态

Assembly	物理组成	蛋白状态	分子拷贝数	共同组分	数据核对
1	蛋白异源复合物	异源复合物	蛋白 8	CARBAMOYL PHOSPHATE SYNTHETASE × 4 （P00968） MANGANESE (II) ION × 16 POTASSIUM ION × 29 PHOSPHATE ION × 9 CHLORIDE ION × 29 GLUTAMINE × 8 ADENOSINE-5'-DIPHOSPHATE × 8 L-ornithine × 4 TETRAETHYLAMMONIUM ION × 4 water × 8	与蛋白数一致
2	蛋白异源复合物	异源复合物	蛋白 2	CARBAMOYL PHOSPHATE SYNTHETASE × 1 （P00968） MANGANESE (II) ION × 4 POTASSIUM ION × 7 PHOSPHATE ION × 2 CHLORIDE ION × 7 GLUTAMINE × 2 ADENOSINE-5'-DIPHOSPHATE × 2 L-ornithine × 1 TETRAETHYLAMMONIUM ION × 1 water × 2	与蛋白数一致
3	蛋白异源复合物	异源复合物	蛋白 2	CARBAMOYL PHOSPHATE SYNTHETASE × 1 （P00968） MANGANESE (II) ION × 4 POTASSIUM ION × 6 PHOSPHATE ION × 2 CHLORIDE ION × 7 GLUTAMINE × 2 ADENOSINE-5'-DIPHOSPHATE × 2 L-ornithine × 1 TETRAETHYLAMMONIUM ION × 1 water × 2	与蛋白数一致
4	蛋白异源复合物	异源复合物	蛋白 2	CARBAMOYL PHOSPHATE SYNTHETASE × 1 （P00968） MANGANESE (II) ION × 4 POTASSIUM ION × 8 PHOSPHATE ION × 3 CHLORIDE ION × 7 GLUTAMINE × 2 ADENOSINE-5'-DIPHOSPHATE × 2 L-ornithine × 1 TETRAETHYLAMMONIUM ION × 1 water × 2	与蛋白数一致
5	蛋白异源复合物	异源复合物	蛋白 2	CARBAMOYL PHOSPHATE SYNTHETASE × 1 （P00968） MANGANESE (II) ION × 4 POTASSIUM ION × 8 PHOSPHATE ION × 2 CHLORIDE ION × 8 GLUTAMINE × 2 ADENOSINE-5'-DIPHOSPHATE × 2 L-ornithine × 1 TETRAETHYLAMMONIUM ION × 1 water × 2	与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据

UniProt名称	CARA_ECOLI
Isoform	—
PDB实体	2
链与序列区间	作者链 C； PDB构建体 1–382； UniProt 1–382 作者链 F； PDB构建体 1–382； UniProt 1–382 作者链 I； PDB构建体 1–382； UniProt 1–382 作者链 L； PDB构建体 1–382； UniProt 1–382

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。链映射与序列区间收在“数据证据”中；数据库内部编号、导入时间和 assembly 操作表达式仅用于维护，因此不在读者页面展示。

▼

2. 结构基本信息 2. Structure Basics

条目编号 entry_id	1jdb
沉积日期 deposition_date	1997-03-25
结构标题 title	CARBAMOYL PHOSPHATE SYNTHETASE FROM ESCHERICHIA COLI
关键词 keywords	LIGASE, AMIDOTRANSFERASE, SYNTHASE; LIGASE
实验方法 method	X-RAY DIFFRACTION

▼

3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

1jdb__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

1jdb__assembly_1__model_1 | I(q)

100 个绘图点；横轴和纵轴均采用对数尺度。

1jdb__assembly_1__model_1 | P(r) · Pending

P(r) 将按相同 assembly/model 分别计算和展示。

Rg（Guinier）	72.01 Å
Rg（电子密度）	72.12 Å
总 Rg	72.02 Å
原子数	44707
残基数	5748
排除体积	796620 Å³
最大 q	0.500 Å⁻¹

Assembly	Model	结构单元	聚集说明	状态	CRYSOL	操作
1	1	`1jdb__assembly_1__model_1`	octameric （8）	成功	4.1.3-1-20251215 (887e7ef)	查看下载
2	1	`1jdb__assembly_2__model_1`	dimeric （2）	成功	4.1.3-1-20251215 (887e7ef)	查看下载
3	1	`1jdb__assembly_3__model_1`	dimeric （2）	成功	4.1.3-1-20251215 (887e7ef)	查看下载
4	1	`1jdb__assembly_4__model_1`	dimeric （2）	成功	4.1.3-1-20251215 (887e7ef)	查看下载
5	1	`1jdb__assembly_5__model_1`	dimeric （2）	成功	4.1.3-1-20251215 (887e7ef)	查看下载

▶

4. 晶体学与实验 4. Crystallography & Experiment

▶

5. 实体与聚合物信息 Entities & Polymers (11)

实体 1 Entity 1 polymer

描述 description	CARBAMOYL PHOSPHATE SYNTHETASE
分子量 formula_weight	117981.8 kDa
EC 编号 ec_number	6.3.5.5
来源方法 src_method	nat
拷贝数 entity_count	4

聚合物 Polymer

聚合物类型 type	polypeptide(L)
链编号 strand_id	B,E,H,K
原子数 atom_count	49731

MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK

实体 2 Entity 2 polymer

描述 description	CARBAMOYL PHOSPHATE SYNTHETASE
分子量 formula_weight	41480.9 kDa
EC 编号 ec_number	6.3.5.5
来源方法 src_method	nat
拷贝数 entity_count	4

聚合物 Polymer

聚合物类型 type	polypeptide(L)
链编号 strand_id	C,F,I,L

MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPQAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK

实体 3 Entity 3 non-polymer

描述 description	MANGANESE (II) ION
分子量 formula_weight	54.9 kDa
来源方法 src_method	syn
拷贝数 entity_count	16

实体 4 Entity 4 non-polymer

描述 description	POTASSIUM ION
分子量 formula_weight	39.1 kDa
来源方法 src_method	syn
拷贝数 entity_count	29

实体 5 Entity 5 non-polymer

描述 description	PHOSPHATE ION
分子量 formula_weight	95.0 kDa
来源方法 src_method	syn
拷贝数 entity_count	9

实体 6 Entity 6 non-polymer

描述 description	CHLORIDE ION
分子量 formula_weight	35.5 kDa
来源方法 src_method	syn
拷贝数 entity_count	29

实体 7 Entity 7 non-polymer

描述 description	GLUTAMINE
分子量 formula_weight	146.1 kDa
来源方法 src_method	syn
拷贝数 entity_count	8

实体 8 Entity 8 non-polymer

描述 description	ADENOSINE-5'-DIPHOSPHATE
分子量 formula_weight	427.2 kDa
来源方法 src_method	syn
拷贝数 entity_count	8

实体 9 Entity 9 non-polymer

描述 description	L-ornithine
分子量 formula_weight	132.2 kDa
来源方法 src_method	syn
拷贝数 entity_count	4

实体 10 Entity 10 non-polymer

描述 description	TETRAETHYLAMMONIUM ION
分子量 formula_weight	130.3 kDa
来源方法 src_method	syn
拷贝数 entity_count	4

实体 11 Entity 11 water

描述 description	water
分子量 formula_weight	18.0 kDa
来源方法 src_method	nat
拷贝数 entity_count	4857

▼

6. 折叠分类 (SCOP + CATH) 72 domains

SCOP 2.08 (32 domains)

结构域编号 domain_id	d1jdbb1
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.92 — Carbamoyl phosphate synthetase, large subunit connection domain
超家族 Superfamily superfamily	a.92.1 — Carbamoyl phosphate synthetase, large subunit connection domain
家族 Family family	a.92.1.1 — Carbamoyl phosphate synthetase, large subunit connection domain

结构域编号 domain_id	d1jdbb2
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.24 — Methylglyoxal synthase-like
超家族 Superfamily superfamily	c.24.1 — Methylglyoxal synthase-like
家族 Family family	c.24.1.1 — Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain

结构域编号 domain_id	d1jdbb3
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.30 — PreATP-grasp domain
超家族 Superfamily superfamily	c.30.1 — PreATP-grasp domain
家族 Family family	c.30.1.1 — BC N-terminal domain-like

结构域编号 domain_id	d1jdbb4
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.30 — PreATP-grasp domain
超家族 Superfamily superfamily	c.30.1 — PreATP-grasp domain
家族 Family family	c.30.1.1 — BC N-terminal domain-like

结构域编号 domain_id	d1jdbb5
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.142 — ATP-grasp
超家族 Superfamily superfamily	d.142.1 — Glutathione synthetase ATP-binding domain-like
家族 Family family	d.142.1.2 — BC ATP-binding domain-like

结构域编号 domain_id	d1jdbb6
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.142 — ATP-grasp
超家族 Superfamily superfamily	d.142.1 — Glutathione synthetase ATP-binding domain-like
家族 Family family	d.142.1.2 — BC ATP-binding domain-like

结构域编号 domain_id	d1jdbc1
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.8 — The 'swivelling' beta/beta/alpha domain
超家族 Superfamily superfamily	c.8.3 — Carbamoyl phosphate synthetase, small subunit N-terminal domain
家族 Family family	c.8.3.1 — Carbamoyl phosphate synthetase, small subunit N-terminal domain

结构域编号 domain_id	d1jdbc2
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.23 — Flavodoxin-like
超家族 Superfamily superfamily	c.23.16 — Class I glutamine amidotransferase-like
家族 Family family	c.23.16.1 — Class I glutamine amidotransferases (GAT)

结构域编号 domain_id	d1jdbe1
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.92 — Carbamoyl phosphate synthetase, large subunit connection domain
超家族 Superfamily superfamily	a.92.1 — Carbamoyl phosphate synthetase, large subunit connection domain
家族 Family family	a.92.1.1 — Carbamoyl phosphate synthetase, large subunit connection domain

结构域编号 domain_id	d1jdbe2
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.24 — Methylglyoxal synthase-like
超家族 Superfamily superfamily	c.24.1 — Methylglyoxal synthase-like
家族 Family family	c.24.1.1 — Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain

结构域编号 domain_id	d1jdbe3
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.30 — PreATP-grasp domain
超家族 Superfamily superfamily	c.30.1 — PreATP-grasp domain
家族 Family family	c.30.1.1 — BC N-terminal domain-like

结构域编号 domain_id	d1jdbe4
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.30 — PreATP-grasp domain
超家族 Superfamily superfamily	c.30.1 — PreATP-grasp domain
家族 Family family	c.30.1.1 — BC N-terminal domain-like

结构域编号 domain_id	d1jdbe5
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.142 — ATP-grasp
超家族 Superfamily superfamily	d.142.1 — Glutathione synthetase ATP-binding domain-like
家族 Family family	d.142.1.2 — BC ATP-binding domain-like

结构域编号 domain_id	d1jdbe6
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.142 — ATP-grasp
超家族 Superfamily superfamily	d.142.1 — Glutathione synthetase ATP-binding domain-like
家族 Family family	d.142.1.2 — BC ATP-binding domain-like

结构域编号 domain_id	d1jdbf1
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.8 — The 'swivelling' beta/beta/alpha domain
超家族 Superfamily superfamily	c.8.3 — Carbamoyl phosphate synthetase, small subunit N-terminal domain
家族 Family family	c.8.3.1 — Carbamoyl phosphate synthetase, small subunit N-terminal domain

结构域编号 domain_id	d1jdbf2
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.23 — Flavodoxin-like
超家族 Superfamily superfamily	c.23.16 — Class I glutamine amidotransferase-like
家族 Family family	c.23.16.1 — Class I glutamine amidotransferases (GAT)

结构域编号 domain_id	d1jdbh1
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.92 — Carbamoyl phosphate synthetase, large subunit connection domain
超家族 Superfamily superfamily	a.92.1 — Carbamoyl phosphate synthetase, large subunit connection domain
家族 Family family	a.92.1.1 — Carbamoyl phosphate synthetase, large subunit connection domain

结构域编号 domain_id	d1jdbh2
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.24 — Methylglyoxal synthase-like
超家族 Superfamily superfamily	c.24.1 — Methylglyoxal synthase-like
家族 Family family	c.24.1.1 — Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain

结构域编号 domain_id	d1jdbh3
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.30 — PreATP-grasp domain
超家族 Superfamily superfamily	c.30.1 — PreATP-grasp domain
家族 Family family	c.30.1.1 — BC N-terminal domain-like

结构域编号 domain_id	d1jdbh4
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.30 — PreATP-grasp domain
超家族 Superfamily superfamily	c.30.1 — PreATP-grasp domain
家族 Family family	c.30.1.1 — BC N-terminal domain-like

结构域编号 domain_id	d1jdbh5
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.142 — ATP-grasp
超家族 Superfamily superfamily	d.142.1 — Glutathione synthetase ATP-binding domain-like
家族 Family family	d.142.1.2 — BC ATP-binding domain-like

结构域编号 domain_id	d1jdbh6
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.142 — ATP-grasp
超家族 Superfamily superfamily	d.142.1 — Glutathione synthetase ATP-binding domain-like
家族 Family family	d.142.1.2 — BC ATP-binding domain-like

结构域编号 domain_id	d1jdbi1
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.8 — The 'swivelling' beta/beta/alpha domain
超家族 Superfamily superfamily	c.8.3 — Carbamoyl phosphate synthetase, small subunit N-terminal domain
家族 Family family	c.8.3.1 — Carbamoyl phosphate synthetase, small subunit N-terminal domain

结构域编号 domain_id	d1jdbi2
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.23 — Flavodoxin-like
超家族 Superfamily superfamily	c.23.16 — Class I glutamine amidotransferase-like
家族 Family family	c.23.16.1 — Class I glutamine amidotransferases (GAT)

结构域编号 domain_id	d1jdbk1
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.92 — Carbamoyl phosphate synthetase, large subunit connection domain
超家族 Superfamily superfamily	a.92.1 — Carbamoyl phosphate synthetase, large subunit connection domain
家族 Family family	a.92.1.1 — Carbamoyl phosphate synthetase, large subunit connection domain

结构域编号 domain_id	d1jdbk2
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.24 — Methylglyoxal synthase-like
超家族 Superfamily superfamily	c.24.1 — Methylglyoxal synthase-like
家族 Family family	c.24.1.1 — Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain

结构域编号 domain_id	d1jdbk3
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.30 — PreATP-grasp domain
超家族 Superfamily superfamily	c.30.1 — PreATP-grasp domain
家族 Family family	c.30.1.1 — BC N-terminal domain-like

结构域编号 domain_id	d1jdbk4
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.30 — PreATP-grasp domain
超家族 Superfamily superfamily	c.30.1 — PreATP-grasp domain
家族 Family family	c.30.1.1 — BC N-terminal domain-like

结构域编号 domain_id	d1jdbk5
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.142 — ATP-grasp
超家族 Superfamily superfamily	d.142.1 — Glutathione synthetase ATP-binding domain-like
家族 Family family	d.142.1.2 — BC ATP-binding domain-like

结构域编号 domain_id	d1jdbk6
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.142 — ATP-grasp
超家族 Superfamily superfamily	d.142.1 — Glutathione synthetase ATP-binding domain-like
家族 Family family	d.142.1.2 — BC ATP-binding domain-like

结构域编号 domain_id	d1jdbl1
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.8 — The 'swivelling' beta/beta/alpha domain
超家族 Superfamily superfamily	c.8.3 — Carbamoyl phosphate synthetase, small subunit N-terminal domain
家族 Family family	c.8.3.1 — Carbamoyl phosphate synthetase, small subunit N-terminal domain

结构域编号 domain_id	d1jdbl2
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.23 — Flavodoxin-like
超家族 Superfamily superfamily	c.23.16 — Class I glutamine amidotransferase-like
家族 Family family	c.23.16.1 — Class I glutamine amidotransferases (GAT)

CATH v4.4 (40 domains)

结构域编号 domain_id	1jdbB01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	40 — 3-Layer(aba) Sandwich
拓扑 Topology topology	50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily	20 —

结构域编号 domain_id	1jdbB02
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	470 — D-amino Acid Aminotransferase; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily	20 — ATP-grasp fold, B domain

结构域编号 domain_id	1jdbB03
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1490 — Dna Ligase; domain 1
同源超家族 H-superfamily homologous superfamily	20 — ATP-grasp fold, A domain

结构域编号 domain_id	1jdbB04
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	1030 — Carbamoyl Phosphate Synthetase; Chain A, domain 4
同源超家族 H-superfamily homologous superfamily	10 — Carbamoyl-phosphate synthetase, large subunit oligomerisation domain

结构域编号 domain_id	1jdbB05
类 Class class	3 — Alpha Beta
架构 Architecture architecture	40 — 3-Layer(aba) Sandwich
拓扑 Topology topology	50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily	20 —

结构域编号 domain_id	1jdbB06
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	470 — D-amino Acid Aminotransferase; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily	20 — ATP-grasp fold, B domain

结构域编号 domain_id	1jdbB07
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1490 — Dna Ligase; domain 1
同源超家族 H-superfamily homologous superfamily	20 — ATP-grasp fold, A domain

结构域编号 domain_id	1jdbB08
类 Class class	3 — Alpha Beta
架构 Architecture architecture	40 — 3-Layer(aba) Sandwich
拓扑 Topology topology	50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily	1380 — Methylglyoxal synthase-like domain

结构域编号 domain_id	1jdbC01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	50 — 3-Layer(bba) Sandwich
拓扑 Topology topology	30 — Glucose Oxidase; domain 1
同源超家族 H-superfamily homologous superfamily	20 — Carbamoyl-phosphate synthase small subunit, N-terminal domain

结构域编号 domain_id	1jdbC02
类 Class class	3 — Alpha Beta
架构 Architecture architecture	40 — 3-Layer(aba) Sandwich
拓扑 Topology topology	50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily	880 — Class I glutamine amidotransferase (GATase) domain

结构域编号 domain_id	1jdbE01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	40 — 3-Layer(aba) Sandwich
拓扑 Topology topology	50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily	20 —

结构域编号 domain_id	1jdbE02
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	470 — D-amino Acid Aminotransferase; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily	20 — ATP-grasp fold, B domain

结构域编号 domain_id	1jdbE03
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1490 — Dna Ligase; domain 1
同源超家族 H-superfamily homologous superfamily	20 — ATP-grasp fold, A domain

结构域编号 domain_id	1jdbE04
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	1030 — Carbamoyl Phosphate Synthetase; Chain A, domain 4
同源超家族 H-superfamily homologous superfamily	10 — Carbamoyl-phosphate synthetase, large subunit oligomerisation domain

结构域编号 domain_id	1jdbE05
类 Class class	3 — Alpha Beta
架构 Architecture architecture	40 — 3-Layer(aba) Sandwich
拓扑 Topology topology	50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily	20 —

结构域编号 domain_id	1jdbE06
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	470 — D-amino Acid Aminotransferase; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily	20 — ATP-grasp fold, B domain

结构域编号 domain_id	1jdbE07
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1490 — Dna Ligase; domain 1
同源超家族 H-superfamily homologous superfamily	20 — ATP-grasp fold, A domain

结构域编号 domain_id	1jdbE08
类 Class class	3 — Alpha Beta
架构 Architecture architecture	40 — 3-Layer(aba) Sandwich
拓扑 Topology topology	50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily	1380 — Methylglyoxal synthase-like domain

结构域编号 domain_id	1jdbF01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	50 — 3-Layer(bba) Sandwich
拓扑 Topology topology	30 — Glucose Oxidase; domain 1
同源超家族 H-superfamily homologous superfamily	20 — Carbamoyl-phosphate synthase small subunit, N-terminal domain

结构域编号 domain_id	1jdbF02
类 Class class	3 — Alpha Beta
架构 Architecture architecture	40 — 3-Layer(aba) Sandwich
拓扑 Topology topology	50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily	880 — Class I glutamine amidotransferase (GATase) domain

结构域编号 domain_id	1jdbH01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	40 — 3-Layer(aba) Sandwich
拓扑 Topology topology	50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily	20 —

结构域编号 domain_id	1jdbH02
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	470 — D-amino Acid Aminotransferase; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily	20 — ATP-grasp fold, B domain

结构域编号 domain_id	1jdbH03
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1490 — Dna Ligase; domain 1
同源超家族 H-superfamily homologous superfamily	20 — ATP-grasp fold, A domain

结构域编号 domain_id	1jdbH04
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	1030 — Carbamoyl Phosphate Synthetase; Chain A, domain 4
同源超家族 H-superfamily homologous superfamily	10 — Carbamoyl-phosphate synthetase, large subunit oligomerisation domain

结构域编号 domain_id	1jdbH05
类 Class class	3 — Alpha Beta
架构 Architecture architecture	40 — 3-Layer(aba) Sandwich
拓扑 Topology topology	50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily	20 —

结构域编号 domain_id	1jdbH06
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	470 — D-amino Acid Aminotransferase; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily	20 — ATP-grasp fold, B domain

结构域编号 domain_id	1jdbH07
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1490 — Dna Ligase; domain 1
同源超家族 H-superfamily homologous superfamily	20 — ATP-grasp fold, A domain

结构域编号 domain_id	1jdbH08
类 Class class	3 — Alpha Beta
架构 Architecture architecture	40 — 3-Layer(aba) Sandwich
拓扑 Topology topology	50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily	1380 — Methylglyoxal synthase-like domain

结构域编号 domain_id	1jdbI01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	50 — 3-Layer(bba) Sandwich
拓扑 Topology topology	30 — Glucose Oxidase; domain 1
同源超家族 H-superfamily homologous superfamily	20 — Carbamoyl-phosphate synthase small subunit, N-terminal domain

结构域编号 domain_id	1jdbI02
类 Class class	3 — Alpha Beta
架构 Architecture architecture	40 — 3-Layer(aba) Sandwich
拓扑 Topology topology	50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily	880 — Class I glutamine amidotransferase (GATase) domain

结构域编号 domain_id	1jdbK01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	40 — 3-Layer(aba) Sandwich
拓扑 Topology topology	50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily	20 —

结构域编号 domain_id	1jdbK02
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	470 — D-amino Acid Aminotransferase; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily	20 — ATP-grasp fold, B domain

结构域编号 domain_id	1jdbK03
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1490 — Dna Ligase; domain 1
同源超家族 H-superfamily homologous superfamily	20 — ATP-grasp fold, A domain

结构域编号 domain_id	1jdbK04
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	1030 — Carbamoyl Phosphate Synthetase; Chain A, domain 4
同源超家族 H-superfamily homologous superfamily	10 — Carbamoyl-phosphate synthetase, large subunit oligomerisation domain

结构域编号 domain_id	1jdbK05
类 Class class	3 — Alpha Beta
架构 Architecture architecture	40 — 3-Layer(aba) Sandwich
拓扑 Topology topology	50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily	20 —

结构域编号 domain_id	1jdbK06
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	470 — D-amino Acid Aminotransferase; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily	20 — ATP-grasp fold, B domain

结构域编号 domain_id	1jdbK07
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1490 — Dna Ligase; domain 1
同源超家族 H-superfamily homologous superfamily	20 — ATP-grasp fold, A domain

结构域编号 domain_id	1jdbK08
类 Class class	3 — Alpha Beta
架构 Architecture architecture	40 — 3-Layer(aba) Sandwich
拓扑 Topology topology	50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily	1380 — Methylglyoxal synthase-like domain

结构域编号 domain_id	1jdbL01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	50 — 3-Layer(bba) Sandwich
拓扑 Topology topology	30 — Glucose Oxidase; domain 1
同源超家族 H-superfamily homologous superfamily	20 — Carbamoyl-phosphate synthase small subunit, N-terminal domain

结构域编号 domain_id	1jdbL02
类 Class class	3 — Alpha Beta
架构 Architecture architecture	40 — 3-Layer(aba) Sandwich
拓扑 Topology topology	50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily	880 — Class I glutamine amidotransferase (GATase) domain

▶

晶胞边长 a length_a	143.800 Å
晶胞边长 b length_b	167.700 Å
晶胞边长 c length_c	323.000 Å
晶胞夹角 α angle_alpha	90.00 °
晶胞夹角 β angle_beta	90.00 °
晶胞夹角 γ angle_gamma	90.00 °
晶胞分子数 Z z_pdb	16

空间群 space_group	P 21 21 21
空间群编号 int_tables_number	19
晶系 crystal_system	—

分辨率 resolution	2.100 Å
最低分辨率 resolution_low	30.000 Å
R 因子 r_factor	—
R_work r_work	0.1790
R_free r_free	—

CARBAMOYL PHOSPHATE SYNTHETASE FROM ESCHERICHIA COLI

1. 蛋白身份与相关结构 Protein Identity & Related Structures

CARBAMOYL PHOSPHATE SYNTHETASE

当前结构中的状态

数据库中的同蛋白其他状态

CARBAMOYL PHOSPHATE SYNTHETASE

当前结构中的状态

数据库中的同蛋白其他状态

2. 结构基本信息 2. Structure Basics

3. Official assembly/model 理论 SAXS Official SAXS Profiles

1jdb__assembly_1__model_1

1jdb__assembly_1__model_1 | I(q)

1jdb__assembly_1__model_1 | P(r) · Pending

4. 晶体学与实验 4. Crystallography & Experiment

晶胞参数 Unit Cell

对称性 Symmetry

精修参数 Refinement

衍射实验 Diffraction

5. 实体与聚合物信息 Entities & Polymers (11)

实体 1 Entity 1 polymer

聚合物 Polymer

实体 2 Entity 2 polymer

聚合物 Polymer

实体 3 Entity 3 non-polymer

实体 4 Entity 4 non-polymer

实体 5 Entity 5 non-polymer

实体 6 Entity 6 non-polymer

实体 7 Entity 7 non-polymer

实体 8 Entity 8 non-polymer

实体 9 Entity 9 non-polymer

实体 10 Entity 10 non-polymer

实体 11 Entity 11 water

6. 折叠分类 (SCOP + CATH) 72 domains

SCOP 2.08 (32 domains)

CATH v4.4 (40 domains)

7. 引用文献 (2)

CARBAMOYL PHOSPHATE SYNTHETASE FROM ESCHERICHIA COLI

1. 蛋白身份与相关结构 Protein Identity & Related Structures

CARBAMOYL PHOSPHATE SYNTHETASE

当前结构中的状态

数据库中的同蛋白其他状态

单体

同源二聚体

同源四聚体

其他同源多聚体

异源或核酸复合物

CARBAMOYL PHOSPHATE SYNTHETASE

当前结构中的状态

数据库中的同蛋白其他状态

单体

同源二聚体

同源四聚体

其他同源多聚体

异源或核酸复合物

2. 结构基本信息 2. Structure Basics

3. Official assembly/model 理论 SAXS Official SAXS Profiles

1jdb__assembly_1__model_1

1jdb__assembly_1__model_1 | I(q)

1jdb__assembly_1__model_1 | P(r) · Pending

4. 晶体学与实验 4. Crystallography & Experiment

晶胞参数 Unit Cell

对称性 Symmetry

精修参数 Refinement

衍射实验 Diffraction

5. 实体与聚合物信息 Entities & Polymers (11)

实体 1 Entity 1 polymer

聚合物 Polymer

实体 2 Entity 2 polymer

聚合物 Polymer

实体 3 Entity 3 non-polymer

实体 4 Entity 4 non-polymer

实体 5 Entity 5 non-polymer

实体 6 Entity 6 non-polymer

实体 7 Entity 7 non-polymer

实体 8 Entity 8 non-polymer

实体 9 Entity 9 non-polymer

实体 10 Entity 10 non-polymer

实体 11 Entity 11 water

6. 折叠分类 (SCOP + CATH) 72 domains

SCOP 2.08 (32 domains)

CATH v4.4 (40 domains)

7. 引用文献 (2)