1jts
DNA PROTECTION AND BINDING BY E. COLI DPS PROTEIN
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 1jts |
| 沉积日期 deposition_date | 2001-08-22 |
| 结构标题 title | DNA PROTECTION AND BINDING BY E. COLI DPS PROTEIN |
| 关键词 keywords | DODECAMER, DNA BINDING PROTEIN; DNA BINDING PROTEIN |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 57.86 Å |
| 回转半径 Rg (电子) rg_electron | 58.01 Å |
| 零角强度 I(0) i0 | 2498200000.00 |
| 分子量 molecular_weight | 420820.0 kDa |
| 排除体积 excluded_volume | 527260 ų |
| 包络体积 envelope_volume | 694050 ų |
| 水化壳体积 shell_volume | 97878 ų |
| 包络直径 envelope_diameter | 190.0 Å |
| 壳层 Rg shell_rg | 61.13 Å |
| 包络 Rg envelope_rg | 56.56 Å |
| 形状 Rg shape_rg | 58.00 Å |
| 总 Rg total_rg | 58.10 Å |
| 总原子数 total_atoms | 29608 |
| 残基数 n_residues | 3727 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 172.2 Å |
| Rg (实空间) rg_real | 58.11 Å |
| Rg 误差 (实空间) rg_real_error | 1.13 Å |
| I(0) (实空间) i0_real | 2.4980e+09 |
| I(0) 误差 (实空间) i0_real_error | 4.5110e+07 |
| Rg (倒空间) rg_reciprocal | 57.61 Å |
| I(0) (倒空间) i0_reciprocal | 2496000000.0000 |
| 解质量估计 total_estimate | 0.7753 |
| 解质量评级 solution_quality | GOOD a GOOD solution |
| P(r) 峰数 n_peaks | 2 |
| 主峰位置 r_peak_primary | 57.4 Å |
| 偏度 Skewness skewness | 0.388 |
| 峰度 Kurtosis kurtosis | -0.705 |
| 角度范围 angular_range | — – 0.1350 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 18400000000.0000 |
| 实空间数据点数 n_real_points | 28 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.693; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.996; Smooth: 0.000 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (3)
6. 折叠分类 (SCOP + CATH) 48 domains
SCOP 2.08 (24 domains)
| 结构域编号 domain_id | d1jtsa_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.25 — Ferritin-like |
| 超家族 Superfamily superfamily | a.25.1 — Ferritin-like |
| 家族 Family family | a.25.1.1 — Ferritin |
| 结构域编号 domain_id | d1jtsb_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.25 — Ferritin-like |
| 超家族 Superfamily superfamily | a.25.1 — Ferritin-like |
| 家族 Family family | a.25.1.1 — Ferritin |
| 结构域编号 domain_id | d1jtsc_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.25 — Ferritin-like |
| 超家族 Superfamily superfamily | a.25.1 — Ferritin-like |
| 家族 Family family | a.25.1.1 — Ferritin |
| 结构域编号 domain_id | d1jtsd_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.25 — Ferritin-like |
| 超家族 Superfamily superfamily | a.25.1 — Ferritin-like |
| 家族 Family family | a.25.1.1 — Ferritin |
| 结构域编号 domain_id | d1jtse_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.25 — Ferritin-like |
| 超家族 Superfamily superfamily | a.25.1 — Ferritin-like |
| 家族 Family family | a.25.1.1 — Ferritin |
| 结构域编号 domain_id | d1jtsf_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.25 — Ferritin-like |
| 超家族 Superfamily superfamily | a.25.1 — Ferritin-like |
| 家族 Family family | a.25.1.1 — Ferritin |
| 结构域编号 domain_id | d1jtsg_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.25 — Ferritin-like |
| 超家族 Superfamily superfamily | a.25.1 — Ferritin-like |
| 家族 Family family | a.25.1.1 — Ferritin |
| 结构域编号 domain_id | d1jtsh_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.25 — Ferritin-like |
| 超家族 Superfamily superfamily | a.25.1 — Ferritin-like |
| 家族 Family family | a.25.1.1 — Ferritin |
| 结构域编号 domain_id | d1jtsi_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.25 — Ferritin-like |
| 超家族 Superfamily superfamily | a.25.1 — Ferritin-like |
| 家族 Family family | a.25.1.1 — Ferritin |
| 结构域编号 domain_id | d1jtsj_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.25 — Ferritin-like |
| 超家族 Superfamily superfamily | a.25.1 — Ferritin-like |
| 家族 Family family | a.25.1.1 — Ferritin |
| 结构域编号 domain_id | d1jtsk_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.25 — Ferritin-like |
| 超家族 Superfamily superfamily | a.25.1 — Ferritin-like |
| 家族 Family family | a.25.1.1 — Ferritin |
| 结构域编号 domain_id | d1jtsl_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.25 — Ferritin-like |
| 超家族 Superfamily superfamily | a.25.1 — Ferritin-like |
| 家族 Family family | a.25.1.1 — Ferritin |
| 结构域编号 domain_id | d1jtsm_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.25 — Ferritin-like |
| 超家族 Superfamily superfamily | a.25.1 — Ferritin-like |
| 家族 Family family | a.25.1.1 — Ferritin |
| 结构域编号 domain_id | d1jtsn_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.25 — Ferritin-like |
| 超家族 Superfamily superfamily | a.25.1 — Ferritin-like |
| 家族 Family family | a.25.1.1 — Ferritin |
| 结构域编号 domain_id | d1jtso_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.25 — Ferritin-like |
| 超家族 Superfamily superfamily | a.25.1 — Ferritin-like |
| 家族 Family family | a.25.1.1 — Ferritin |
| 结构域编号 domain_id | d1jtsp_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.25 — Ferritin-like |
| 超家族 Superfamily superfamily | a.25.1 — Ferritin-like |
| 家族 Family family | a.25.1.1 — Ferritin |
| 结构域编号 domain_id | d1jtsq_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.25 — Ferritin-like |
| 超家族 Superfamily superfamily | a.25.1 — Ferritin-like |
| 家族 Family family | a.25.1.1 — Ferritin |
| 结构域编号 domain_id | d1jtsr_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.25 — Ferritin-like |
| 超家族 Superfamily superfamily | a.25.1 — Ferritin-like |
| 家族 Family family | a.25.1.1 — Ferritin |
| 结构域编号 domain_id | d1jtss_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.25 — Ferritin-like |
| 超家族 Superfamily superfamily | a.25.1 — Ferritin-like |
| 家族 Family family | a.25.1.1 — Ferritin |
| 结构域编号 domain_id | d1jtst_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.25 — Ferritin-like |
| 超家族 Superfamily superfamily | a.25.1 — Ferritin-like |
| 家族 Family family | a.25.1.1 — Ferritin |
| 结构域编号 domain_id | d1jtsu_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.25 — Ferritin-like |
| 超家族 Superfamily superfamily | a.25.1 — Ferritin-like |
| 家族 Family family | a.25.1.1 — Ferritin |
| 结构域编号 domain_id | d1jtsv_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.25 — Ferritin-like |
| 超家族 Superfamily superfamily | a.25.1 — Ferritin-like |
| 家族 Family family | a.25.1.1 — Ferritin |
| 结构域编号 domain_id | d1jtsw_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.25 — Ferritin-like |
| 超家族 Superfamily superfamily | a.25.1 — Ferritin-like |
| 家族 Family family | a.25.1.1 — Ferritin |
| 结构域编号 domain_id | d1jtsx_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.25 — Ferritin-like |
| 超家族 Superfamily superfamily | a.25.1 — Ferritin-like |
| 家族 Family family | a.25.1.1 — Ferritin |
CATH v4.4 (24 domains)
| 结构域编号 domain_id | 1jtsA00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 1260 — Ferritin |
| 同源超家族 H-superfamily homologous superfamily | 10 — Ferritin, core subunit, four-helix bundle |
| 结构域编号 domain_id | 1jtsB00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 1260 — Ferritin |
| 同源超家族 H-superfamily homologous superfamily | 10 — Ferritin, core subunit, four-helix bundle |
| 结构域编号 domain_id | 1jtsC00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 1260 — Ferritin |
| 同源超家族 H-superfamily homologous superfamily | 10 — Ferritin, core subunit, four-helix bundle |
| 结构域编号 domain_id | 1jtsD00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 1260 — Ferritin |
| 同源超家族 H-superfamily homologous superfamily | 10 — Ferritin, core subunit, four-helix bundle |
| 结构域编号 domain_id | 1jtsE00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 1260 — Ferritin |
| 同源超家族 H-superfamily homologous superfamily | 10 — Ferritin, core subunit, four-helix bundle |
| 结构域编号 domain_id | 1jtsF00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 1260 — Ferritin |
| 同源超家族 H-superfamily homologous superfamily | 10 — Ferritin, core subunit, four-helix bundle |
| 结构域编号 domain_id | 1jtsG00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 1260 — Ferritin |
| 同源超家族 H-superfamily homologous superfamily | 10 — Ferritin, core subunit, four-helix bundle |
| 结构域编号 domain_id | 1jtsH00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 1260 — Ferritin |
| 同源超家族 H-superfamily homologous superfamily | 10 — Ferritin, core subunit, four-helix bundle |
| 结构域编号 domain_id | 1jtsI00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 1260 — Ferritin |
| 同源超家族 H-superfamily homologous superfamily | 10 — Ferritin, core subunit, four-helix bundle |
| 结构域编号 domain_id | 1jtsJ00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 1260 — Ferritin |
| 同源超家族 H-superfamily homologous superfamily | 10 — Ferritin, core subunit, four-helix bundle |
| 结构域编号 domain_id | 1jtsK00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 1260 — Ferritin |
| 同源超家族 H-superfamily homologous superfamily | 10 — Ferritin, core subunit, four-helix bundle |
| 结构域编号 domain_id | 1jtsL00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 1260 — Ferritin |
| 同源超家族 H-superfamily homologous superfamily | 10 — Ferritin, core subunit, four-helix bundle |
| 结构域编号 domain_id | 1jtsM00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 1260 — Ferritin |
| 同源超家族 H-superfamily homologous superfamily | 10 — Ferritin, core subunit, four-helix bundle |
| 结构域编号 domain_id | 1jtsN00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 1260 — Ferritin |
| 同源超家族 H-superfamily homologous superfamily | 10 — Ferritin, core subunit, four-helix bundle |
| 结构域编号 domain_id | 1jtsO00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 1260 — Ferritin |
| 同源超家族 H-superfamily homologous superfamily | 10 — Ferritin, core subunit, four-helix bundle |
| 结构域编号 domain_id | 1jtsP00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 1260 — Ferritin |
| 同源超家族 H-superfamily homologous superfamily | 10 — Ferritin, core subunit, four-helix bundle |
| 结构域编号 domain_id | 1jtsQ00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 1260 — Ferritin |
| 同源超家族 H-superfamily homologous superfamily | 10 — Ferritin, core subunit, four-helix bundle |
| 结构域编号 domain_id | 1jtsR00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 1260 — Ferritin |
| 同源超家族 H-superfamily homologous superfamily | 10 — Ferritin, core subunit, four-helix bundle |
| 结构域编号 domain_id | 1jtsS00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 1260 — Ferritin |
| 同源超家族 H-superfamily homologous superfamily | 10 — Ferritin, core subunit, four-helix bundle |
| 结构域编号 domain_id | 1jtsT00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 1260 — Ferritin |
| 同源超家族 H-superfamily homologous superfamily | 10 — Ferritin, core subunit, four-helix bundle |
| 结构域编号 domain_id | 1jtsU00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 1260 — Ferritin |
| 同源超家族 H-superfamily homologous superfamily | 10 — Ferritin, core subunit, four-helix bundle |
| 结构域编号 domain_id | 1jtsV00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 1260 — Ferritin |
| 同源超家族 H-superfamily homologous superfamily | 10 — Ferritin, core subunit, four-helix bundle |
| 结构域编号 domain_id | 1jtsW00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 1260 — Ferritin |
| 同源超家族 H-superfamily homologous superfamily | 10 — Ferritin, core subunit, four-helix bundle |
| 结构域编号 domain_id | 1jtsX00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 1260 — Ferritin |
| 同源超家族 H-superfamily homologous superfamily | 10 — Ferritin, core subunit, four-helix bundle |