1l2f

Crystal structure of NusA from Thermotoga maritima: a structure-based role of the N-terminal domain

Method: X-RAY DIFFRACTION

1. Protein Identity and Related Structures Protein Identity & Related Structures

N utilization substance protein A

Thermotoga maritima

UniProt Q9X298

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein monomer Monomer Protein 1 water × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q9X298_THEMA
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–369; UniProt 1–344

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

2. Structure Basics 2. Structure Basics

Entry ID entry_id1l2f
Deposition date deposition_date2002-02-20
Structure title titleCrystal structure of NusA from Thermotoga maritima: a structure-based role of the N-terminal domain
Keywords keywords;NusA, OB fold KH domain, RNA polymerase, Structural Genomics, BSGC structure funded by NIH, Protein Structure Initiative, PSI, Berkeley Structural Genomics Center, TRANSCRIPTION ;; TRANSCRIPTION
Experimental Method methodX-RAY DIFFRACTION

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

1l2f__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

1l2f__assembly_1__model_1 | I(q)

10-2 10-1 105 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

1l2f__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)34.31 Å
Rg (electron density)34.88 Å
Total Rg34.94 Å
Atom count2667
Residues340
Excluded volume48539 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 1l2f__assembly_1__model_1 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download

4. Crystallography and Experiment 4. Crystallography & Experiment

5. Entities and Polymers Entities & Polymers (2)

6. Fold Classification (SCOP + CATH) 8 domains

SCOP 2.08 (4 domains)

Domain ID domain_idd1l2fa1
Class classb — All beta proteins
Fold Fold foldb.40 — OB-fold
Superfamily Superfamily superfamilyb.40.4 — Nucleic acid-binding proteins
Family Family familyb.40.4.5 — Cold shock DNA-binding domain-like
Domain ID domain_idd1l2fa2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.52 — Alpha-lytic protease prodomain-like
Superfamily Superfamily superfamilyd.52.3 — Prokaryotic type KH domain (KH-domain type II)
Family Family familyd.52.3.1 — Prokaryotic type KH domain (KH-domain type II)
Domain ID domain_idd1l2fa3
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.52 — Alpha-lytic protease prodomain-like
Superfamily Superfamily superfamilyd.52.3 — Prokaryotic type KH domain (KH-domain type II)
Family Family familyd.52.3.1 — Prokaryotic type KH domain (KH-domain type II)
Domain ID domain_idd1l2fa4
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.202 — Transcription factor NusA, N-terminal domain
Superfamily Superfamily superfamilyd.202.1 — Transcription factor NusA, N-terminal domain
Family Family familyd.202.1.1 — Transcription factor NusA, N-terminal domain

CATH v4.4 (4 domains)

Domain ID domain_id1l2fA01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1480 — N Utilization Substance Protein A; Chain:P; domain 4
Homologous superfamily homologous superfamily10 — NusA, N-terminal domain
Domain ID domain_id1l2fA02
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
Homologous superfamily homologous superfamily140 — Nucleic acid-binding proteins
Domain ID domain_id1l2fA03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology300 — GMP Synthetase; Chain A, domain 3
Homologous superfamily homologous superfamily20 — K homology (KH) domain
Domain ID domain_id1l2fA04
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology300 — GMP Synthetase; Chain A, domain 3
Homologous superfamily homologous superfamily20 — K homology (KH) domain

7. Citations (1)