1lnz
Structure of the Obg GTP-binding protein
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 1lnz |
| 沉积日期 deposition_date | 2002-05-04 |
| 结构标题 title | Structure of the Obg GTP-binding protein |
| 关键词 keywords | ;GTPase, Obg, stringent factor, stress response, sporulation, large G-protein, Structural Genomics, PSI, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, CELL CYCLE ;; CELL CYCLE |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 32.99 Å |
| 回转半径 Rg (电子) rg_electron | 32.31 Å |
| 零角强度 I(0) i0 | 95832400.00 |
| 分子量 molecular_weight | 73926.0 kDa |
| 排除体积 excluded_volume | 90724 ų |
| 包络体积 envelope_volume | 122330 ų |
| 水化壳体积 shell_volume | 33345 ų |
| 包络直径 envelope_diameter | 113.0 Å |
| 壳层 Rg shell_rg | 36.84 Å |
| 包络 Rg envelope_rg | 32.44 Å |
| 形状 Rg shape_rg | 32.32 Å |
| 总 Rg total_rg | 32.64 Å |
| 总原子数 total_atoms | 5124 |
| 残基数 n_residues | 642 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 108.0 Å |
| Rg (实空间) rg_real | 32.95 Å |
| Rg 误差 (实空间) rg_real_error | 1.12 Å |
| I(0) (实空间) i0_real | 9.5830e+07 |
| I(0) 误差 (实空间) i0_real_error | 1.5880e+06 |
| Rg (倒空间) rg_reciprocal | 32.97 Å |
| I(0) (倒空间) i0_reciprocal | 95830000.0000 |
| 解质量估计 total_estimate | 0.9037 |
| 解质量评级 solution_quality | EXCELLENT a EXCELLENT solution |
| P(r) 峰数 n_peaks | 2 |
| 主峰位置 r_peak_primary | 40.5 Å |
| 偏度 Skewness skewness | 0.206 |
| 峰度 Kurtosis kurtosis | -0.562 |
| 角度范围 angular_range | — – 0.2400 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 5920000.0000 |
| 实空间数据点数 n_real_points | 49 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.940; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.975; Smooth: 0.952 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (4)
6. 折叠分类 (SCOP + CATH) 10 domains
SCOP 2.08 (6 domains)
| 结构域编号 domain_id | d1lnza1 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.117 — Obg-fold |
| 超家族 Superfamily superfamily | b.117.1 — Obg GTP-binding protein N-terminal domain |
| 家族 Family family | b.117.1.1 — Obg GTP-binding protein N-terminal domain |
| 结构域编号 domain_id | d1lnza2 |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.37 — P-loop containing nucleoside triphosphate hydrolases |
| 超家族 Superfamily superfamily | c.37.1 — P-loop containing nucleoside triphosphate hydrolases |
| 家族 Family family | c.37.1.8 — G proteins |
| 结构域编号 domain_id | d1lnza3 |
| 类 Class class | l — Artifacts |
| 折叠类型 Fold fold | l.1 — Tags |
| 超家族 Superfamily superfamily | l.1.1 — Tags |
| 家族 Family family | l.1.1.1 — Tags |
| 结构域编号 domain_id | d1lnzb1 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.117 — Obg-fold |
| 超家族 Superfamily superfamily | b.117.1 — Obg GTP-binding protein N-terminal domain |
| 家族 Family family | b.117.1.1 — Obg GTP-binding protein N-terminal domain |
| 结构域编号 domain_id | d1lnzb2 |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.37 — P-loop containing nucleoside triphosphate hydrolases |
| 超家族 Superfamily superfamily | c.37.1 — P-loop containing nucleoside triphosphate hydrolases |
| 家族 Family family | c.37.1.8 — G proteins |
| 结构域编号 domain_id | d1lnzb3 |
| 类 Class class | l — Artifacts |
| 折叠类型 Fold fold | l.1 — Tags |
| 超家族 Superfamily superfamily | l.1.1 — Tags |
| 家族 Family family | l.1.1.1 — Tags |
CATH v4.4 (4 domains)
| 结构域编号 domain_id | 1lnzA01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 70 — Distorted Sandwich |
| 拓扑 Topology topology | 210 — Spo0b-associated Gtp-binding Protein; Chain: A, |
| 同源超家族 H-superfamily homologous superfamily | 12 — GTP1/OBG domain |
| 结构域编号 domain_id | 1lnzA02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 50 — Rossmann fold |
| 同源超家族 H-superfamily homologous superfamily | 300 — P-loop containing nucleotide triphosphate hydrolases |
| 结构域编号 domain_id | 1lnzB01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 70 — Distorted Sandwich |
| 拓扑 Topology topology | 210 — Spo0b-associated Gtp-binding Protein; Chain: A, |
| 同源超家族 H-superfamily homologous superfamily | 12 — GTP1/OBG domain |
| 结构域编号 domain_id | 1lnzB02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 50 — Rossmann fold |
| 同源超家族 H-superfamily homologous superfamily | 300 — P-loop containing nucleotide triphosphate hydrolases |