1lql
Crystal structure of OsmC like protein from Mycoplasma pneumoniae
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 1lql |
| 沉积日期 deposition_date | 2002-05-10 |
| 结构标题 title | Crystal structure of OsmC like protein from Mycoplasma pneumoniae |
| 关键词 keywords | ;OsmC, New Fold, Structural Genomics, BSGC structure funded by NIH, Protein Structure Initiative, PSI, Berkeley Structural Genomics Center, UNKNOWN FUNCTION ;; UNKNOWN FUNCTION |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 43.78 Å |
| 回转半径 Rg (电子) rg_electron | 43.61 Å |
| 零角强度 I(0) i0 | 370563000.00 |
| 分子量 molecular_weight | 157400.0 kDa |
| 排除体积 excluded_volume | 197090 ų |
| 包络体积 envelope_volume | 270520 ų |
| 水化壳体积 shell_volume | 54386 ų |
| 包络直径 envelope_diameter | 156.1 Å |
| 壳层 Rg shell_rg | 45.92 Å |
| 包络 Rg envelope_rg | 42.70 Å |
| 形状 Rg shape_rg | 43.61 Å |
| 总 Rg total_rg | 43.74 Å |
| 总原子数 total_atoms | 11038 |
| 残基数 n_residues | 1432 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 145.4 Å |
| Rg (实空间) rg_real | 43.80 Å |
| Rg 误差 (实空间) rg_real_error | 1.44 Å |
| I(0) (实空间) i0_real | 3.7060e+08 |
| I(0) 误差 (实空间) i0_real_error | 7.4620e+06 |
| Rg (倒空间) rg_reciprocal | 43.78 Å |
| I(0) (倒空间) i0_reciprocal | 370600000.0000 |
| 解质量估计 total_estimate | 0.8806 |
| 解质量评级 solution_quality | GOOD a GOOD solution |
| P(r) 峰数 n_peaks | 2 |
| 主峰位置 r_peak_primary | 56.5 Å |
| 偏度 Skewness skewness | 0.272 |
| 峰度 Kurtosis kurtosis | -0.416 |
| 角度范围 angular_range | — – 0.1800 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 33080000.0000 |
| 实空间数据点数 n_real_points | 37 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.900; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.976; Smooth: 0.767 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (2)
6. 折叠分类 (SCOP + CATH) 35 domains
SCOP 2.08 (15 domains)
| 结构域编号 domain_id | d1lqla_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.227 — OsmC-like |
| 超家族 Superfamily superfamily | d.227.1 — OsmC-like |
| 家族 Family family | d.227.1.1 — Ohr/OsmC resistance proteins |
| 结构域编号 domain_id | d1lqlb_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.227 — OsmC-like |
| 超家族 Superfamily superfamily | d.227.1 — OsmC-like |
| 家族 Family family | d.227.1.1 — Ohr/OsmC resistance proteins |
| 结构域编号 domain_id | d1lqlc1 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.227 — OsmC-like |
| 超家族 Superfamily superfamily | d.227.1 — OsmC-like |
| 家族 Family family | d.227.1.1 — Ohr/OsmC resistance proteins |
| 结构域编号 domain_id | d1lqlc2 |
| 类 Class class | l — Artifacts |
| 折叠类型 Fold fold | l.1 — Tags |
| 超家族 Superfamily superfamily | l.1.1 — Tags |
| 家族 Family family | l.1.1.1 — Tags |
| 结构域编号 domain_id | d1lqld1 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.227 — OsmC-like |
| 超家族 Superfamily superfamily | d.227.1 — OsmC-like |
| 家族 Family family | d.227.1.1 — Ohr/OsmC resistance proteins |
| 结构域编号 domain_id | d1lqld2 |
| 类 Class class | l — Artifacts |
| 折叠类型 Fold fold | l.1 — Tags |
| 超家族 Superfamily superfamily | l.1.1 — Tags |
| 家族 Family family | l.1.1.1 — Tags |
| 结构域编号 domain_id | d1lqle_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.227 — OsmC-like |
| 超家族 Superfamily superfamily | d.227.1 — OsmC-like |
| 家族 Family family | d.227.1.1 — Ohr/OsmC resistance proteins |
| 结构域编号 domain_id | d1lqlf1 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.227 — OsmC-like |
| 超家族 Superfamily superfamily | d.227.1 — OsmC-like |
| 家族 Family family | d.227.1.1 — Ohr/OsmC resistance proteins |
| 结构域编号 domain_id | d1lqlf2 |
| 类 Class class | l — Artifacts |
| 折叠类型 Fold fold | l.1 — Tags |
| 超家族 Superfamily superfamily | l.1.1 — Tags |
| 家族 Family family | l.1.1.1 — Tags |
| 结构域编号 domain_id | d1lqlg_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.227 — OsmC-like |
| 超家族 Superfamily superfamily | d.227.1 — OsmC-like |
| 家族 Family family | d.227.1.1 — Ohr/OsmC resistance proteins |
| 结构域编号 domain_id | d1lqlh_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.227 — OsmC-like |
| 超家族 Superfamily superfamily | d.227.1 — OsmC-like |
| 家族 Family family | d.227.1.1 — Ohr/OsmC resistance proteins |
| 结构域编号 domain_id | d1lqli1 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.227 — OsmC-like |
| 超家族 Superfamily superfamily | d.227.1 — OsmC-like |
| 家族 Family family | d.227.1.1 — Ohr/OsmC resistance proteins |
| 结构域编号 domain_id | d1lqli2 |
| 类 Class class | l — Artifacts |
| 折叠类型 Fold fold | l.1 — Tags |
| 超家族 Superfamily superfamily | l.1.1 — Tags |
| 家族 Family family | l.1.1.1 — Tags |
| 结构域编号 domain_id | d1lqlj1 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.227 — OsmC-like |
| 超家族 Superfamily superfamily | d.227.1 — OsmC-like |
| 家族 Family family | d.227.1.1 — Ohr/OsmC resistance proteins |
| 结构域编号 domain_id | d1lqlj2 |
| 类 Class class | l — Artifacts |
| 折叠类型 Fold fold | l.1 — Tags |
| 超家族 Superfamily superfamily | l.1.1 — Tags |
| 家族 Family family | l.1.1.1 — Tags |
CATH v4.4 (20 domains)
| 结构域编号 domain_id | 1lqlA01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 20 — Single Sheet |
| 拓扑 Topology topology | 25 — N-terminal domain of TfIIb |
| 同源超家族 H-superfamily homologous superfamily | 10 — |
| 结构域编号 domain_id | 1lqlA02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 300 — GMP Synthetase; Chain A, domain 3 |
| 同源超家族 H-superfamily homologous superfamily | 20 — K homology (KH) domain |
| 结构域编号 domain_id | 1lqlB01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 20 — Single Sheet |
| 拓扑 Topology topology | 25 — N-terminal domain of TfIIb |
| 同源超家族 H-superfamily homologous superfamily | 10 — |
| 结构域编号 domain_id | 1lqlB02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 300 — GMP Synthetase; Chain A, domain 3 |
| 同源超家族 H-superfamily homologous superfamily | 20 — K homology (KH) domain |
| 结构域编号 domain_id | 1lqlC01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 20 — Single Sheet |
| 拓扑 Topology topology | 25 — N-terminal domain of TfIIb |
| 同源超家族 H-superfamily homologous superfamily | 10 — |
| 结构域编号 domain_id | 1lqlC02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 300 — GMP Synthetase; Chain A, domain 3 |
| 同源超家族 H-superfamily homologous superfamily | 20 — K homology (KH) domain |
| 结构域编号 domain_id | 1lqlD01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 20 — Single Sheet |
| 拓扑 Topology topology | 25 — N-terminal domain of TfIIb |
| 同源超家族 H-superfamily homologous superfamily | 10 — |
| 结构域编号 domain_id | 1lqlD02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 300 — GMP Synthetase; Chain A, domain 3 |
| 同源超家族 H-superfamily homologous superfamily | 20 — K homology (KH) domain |
| 结构域编号 domain_id | 1lqlE01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 20 — Single Sheet |
| 拓扑 Topology topology | 25 — N-terminal domain of TfIIb |
| 同源超家族 H-superfamily homologous superfamily | 10 — |
| 结构域编号 domain_id | 1lqlE02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 300 — GMP Synthetase; Chain A, domain 3 |
| 同源超家族 H-superfamily homologous superfamily | 20 — K homology (KH) domain |
| 结构域编号 domain_id | 1lqlF01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 20 — Single Sheet |
| 拓扑 Topology topology | 25 — N-terminal domain of TfIIb |
| 同源超家族 H-superfamily homologous superfamily | 10 — |
| 结构域编号 domain_id | 1lqlF02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 300 — GMP Synthetase; Chain A, domain 3 |
| 同源超家族 H-superfamily homologous superfamily | 20 — K homology (KH) domain |
| 结构域编号 domain_id | 1lqlG01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 20 — Single Sheet |
| 拓扑 Topology topology | 25 — N-terminal domain of TfIIb |
| 同源超家族 H-superfamily homologous superfamily | 10 — |
| 结构域编号 domain_id | 1lqlG02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 300 — GMP Synthetase; Chain A, domain 3 |
| 同源超家族 H-superfamily homologous superfamily | 20 — K homology (KH) domain |
| 结构域编号 domain_id | 1lqlH01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 20 — Single Sheet |
| 拓扑 Topology topology | 25 — N-terminal domain of TfIIb |
| 同源超家族 H-superfamily homologous superfamily | 10 — |
| 结构域编号 domain_id | 1lqlH02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 300 — GMP Synthetase; Chain A, domain 3 |
| 同源超家族 H-superfamily homologous superfamily | 20 — K homology (KH) domain |
| 结构域编号 domain_id | 1lqlI01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 20 — Single Sheet |
| 拓扑 Topology topology | 25 — N-terminal domain of TfIIb |
| 同源超家族 H-superfamily homologous superfamily | 10 — |
| 结构域编号 domain_id | 1lqlI02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 300 — GMP Synthetase; Chain A, domain 3 |
| 同源超家族 H-superfamily homologous superfamily | 20 — K homology (KH) domain |
| 结构域编号 domain_id | 1lqlJ01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 20 — Single Sheet |
| 拓扑 Topology topology | 25 — N-terminal domain of TfIIb |
| 同源超家族 H-superfamily homologous superfamily | 10 — |
| 结构域编号 domain_id | 1lqlJ02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 300 — GMP Synthetase; Chain A, domain 3 |
| 同源超家族 H-superfamily homologous superfamily | 20 — K homology (KH) domain |